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NBISweden
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aMeta
Ancient microbiome snakemake workflow
MIT License
19
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15
forks
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fixed path in damage.smk
#23
LeandroRitter
closed
2 years ago
0
fixed path in damage.smk
#22
LeandroRitter
closed
2 years ago
0
changes of redundant paths
#21
LeandroRitter
closed
2 years ago
0
changes of changes redundant paths
#20
LeandroRitter
closed
2 years ago
0
changes of changes redundant paths
#19
LeandroRitter
closed
2 years ago
0
removed pathogenome_path as a redundant path
#18
LeandroRitter
closed
2 years ago
0
Mapdamage speedup
#17
percyfal
closed
2 years ago
0
fixed "grep: resources/seqid2taxid.pathogen.map: No such file or directory" error
#16
LeandroRitter
closed
2 years ago
1
Run multiqc once for raw and trimmed data
#15
percyfal
closed
2 years ago
1
Update workflow report
#14
percyfal
opened
2 years ago
0
Collect more metrics in multiqc
#13
percyfal
closed
2 years ago
2
Add database init steps to runtest
#12
percyfal
closed
2 years ago
0
Move github workflow test tweaks to separate installation script
#11
percyfal
closed
2 years ago
2
fixed pathogenomesFound.tab file
#10
LeandroRitter
closed
2 years ago
1
Add resource and activate malt
#9
percyfal
closed
2 years ago
0
Convert space to tab to fix mapdamage test
#8
percyfal
closed
2 years ago
1
Docs
#7
percyfal
closed
2 years ago
0
Add logic for excluding and including samples
#6
percyfal
closed
2 years ago
0
samtools added to the environment file
#5
emrahkirdok
closed
2 years ago
0
preload switch added
#4
emrahkirdok
closed
2 years ago
0
Add support for sample include/exclude
#3
percyfal
closed
2 years ago
0
Remove hard-coded paths from authentication scripts and parametrize them in configuration
#2
percyfal
closed
2 years ago
2
Make sure pathogens are detected for mapdamage to run
#1
percyfal
closed
2 years ago
2
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