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NBISweden
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wgs-structvar
Whole Genome Sequenceing Structural Variation Pipelines
GNU General Public License v3.0
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Cleaned up workdir
#51
viklund
closed
8 years ago
0
Bugfix: show version when not running directly from git
#50
viklund
closed
8 years ago
0
Release v0.2
#49
viklund
closed
8 years ago
0
Release v0.2
#48
viklund
closed
8 years ago
0
Feature/cleanup
#47
viklund
closed
8 years ago
0
Feature - vcf-files
#46
viklund
closed
8 years ago
0
vcf headers
#45
viklund
closed
8 years ago
5
Feature/better order
#44
viklund
closed
8 years ago
0
Is vt needed for snpEFF?
#43
viklund
closed
8 years ago
1
CNVnator problem
#42
viklund
closed
8 years ago
5
snpEff annotator
#41
viklund
closed
8 years ago
0
Variant Effect Predictor
#40
viklund
closed
8 years ago
0
Better test data
#39
pallolason
closed
8 years ago
1
Make ref_fasta configurable in config file (and command line parameter)
#38
viklund
closed
8 years ago
0
Release for v0.1-alpha2
#37
viklund
closed
8 years ago
0
Feature/mask files in repo
#36
viklund
closed
8 years ago
0
Feature/keep vcf files
#35
viklund
closed
8 years ago
0
Annotering Variant effect predictor
#34
viklund
closed
8 years ago
0
Annotering snpEff
#33
viklund
opened
8 years ago
0
CNVnator
#32
viklund
opened
8 years ago
2
TIDDIT
#31
viklund
opened
8 years ago
2
Production beta merge
#30
viklund
closed
8 years ago
0
Moved SVvcf2bed.pl to the nextflow endorsed script folder.
#29
viklund
closed
8 years ago
0
Updated readme to document Nextflow instead of make
#28
viklund
closed
8 years ago
0
Use local executor for low resource jobs
#27
viklund
closed
8 years ago
0
Better handling of summary file creation
#26
viklund
closed
8 years ago
0
Feature/svvcf2bed in repo 2
#25
viklund
closed
8 years ago
0
Feature/svvcf2bed in repo
#24
viklund
closed
8 years ago
0
Check for .bai files as well as .bam.bai. Closes #21
#23
viklund
closed
8 years ago
0
world executable SVvcf2bed
#22
pallolason
closed
8 years ago
0
Test for .bai index file in addition to .bam.bai
#21
pallolason
closed
8 years ago
0
Check for bam index and use it if it exists
#20
viklund
closed
8 years ago
0
Moved main.nf to base dir, should now be runnable without checkout
#19
viklund
closed
8 years ago
0
Do we need bgzip from tabix
#18
viklund
closed
8 years ago
1
Default workflow behaviour
#17
viklund
closed
8 years ago
0
Make the workflow runnable from github
#16
viklund
closed
8 years ago
0
Check for bam index
#15
viklund
closed
8 years ago
0
Some minor cleanups of the code
#14
viklund
closed
8 years ago
0
Filter the result files and intersections between fermi and manta
#13
viklund
closed
8 years ago
0
What parameters should the workflow take
#12
viklund
closed
8 years ago
0
Fermikit process
#11
viklund
closed
8 years ago
0
Process for running manta
#10
viklund
closed
8 years ago
0
What human reference?
#9
viklund
closed
8 years ago
1
Use module system instead of hardcoded paths
#8
viklund
closed
8 years ago
0
Real fastq generation on uppmax
#7
viklund
closed
8 years ago
0
Feature/base nextflow script
#6
viklund
closed
8 years ago
0
add waffle.io badge
#5
viklund
closed
8 years ago
0
waffle.io Badge
#4
waffle-iron
closed
8 years ago
0
Basic nextflow pipeline
#3
viklund
closed
8 years ago
0
Uppmax netflow installation information
#2
viklund
closed
8 years ago
1
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