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NBISweden
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wgs-structvar
Whole Genome Sequenceing Structural Variation Pipelines
GNU General Public License v3.0
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[Running problem]Unknown config attribute `params.False`
#101
hanxuelian
opened
3 years ago
1
Update README.md to include other sv workflows.
#100
viklund
closed
5 years ago
0
Release bump
#99
viklund
closed
7 years ago
0
Create LICENSE
#98
viklund
closed
7 years ago
0
Develop
#97
viklund
closed
7 years ago
0
Make it possible to turn off genomic_region_filtering
#96
viklund
opened
7 years ago
0
Rename filterings to
#95
viklund
opened
7 years ago
0
Runfile ignore errors
#94
glormph
closed
7 years ago
0
Mask swegen feature
#93
glormph
closed
7 years ago
0
Mask with swegen dataset
#92
viklund
opened
7 years ago
0
Smarter error handling especially for multiple runs
#91
viklund
opened
7 years ago
3
Fastq and bamindex creation to workdir if necessary
#90
glormph
closed
7 years ago
0
Feature/include configs
#89
viklund
closed
7 years ago
0
Revert "simplified git_grab_revision function"
#88
viklund
closed
7 years ago
0
get rid of .close()
#87
maxulysse
closed
7 years ago
0
simplified git_grab_revision function
#86
maxulysse
closed
7 years ago
0
snpEff got an error when running on a complete bamfile.
#85
viklund
opened
7 years ago
0
Added support link to new issue in README.md
#84
viklund
closed
7 years ago
1
FastQ creation checks
#83
viklund
opened
7 years ago
0
FastQ and bam index files are created next to original bam file
#82
viklund
opened
7 years ago
1
Version 1.1
#81
viklund
opened
7 years ago
0
Support handling
#80
viklund
opened
7 years ago
0
Forgot a $
#79
viklund
closed
7 years ago
1
Support includeConfig to mix configs from files.
#78
glormph
opened
7 years ago
0
Merge develop to create release 1.0
#77
glormph
closed
7 years ago
1
Remove if exist clauses
#76
glormph
closed
7 years ago
0
Param input check
#75
glormph
closed
7 years ago
0
Param input check
#74
glormph
closed
7 years ago
0
Test runs before release 1.0
#73
glormph
closed
7 years ago
0
Release1.0 prep
#72
glormph
closed
7 years ago
0
Vep memory fix
#71
viklund
closed
7 years ago
0
Slurm book cores
#70
glormph
closed
7 years ago
0
Release1.0 prep -- first round
#69
glormph
closed
7 years ago
0
Release 1.0
#68
viklund
opened
7 years ago
0
The help message should be clear
#67
viklund
closed
7 years ago
2
Readme.md should contain all information needed for running the workflow
#66
viklund
closed
7 years ago
1
Should be runnable out of the box on uppmax
#65
viklund
closed
7 years ago
0
This is just a test
#64
viklund
closed
7 years ago
0
Slurm memory overflow on variant effect prediction
#63
dnil
closed
7 years ago
2
Use current versions of samtools and manta
#62
marcelm
closed
7 years ago
0
Fix: masks/ dir is relative to main script dir
#61
marcelm
closed
7 years ago
0
Add a "local" profile for running locally
#60
marcelm
closed
7 years ago
0
Release pull
#59
viklund
closed
7 years ago
0
Normalize vcf in a separate process
#58
viklund
closed
7 years ago
0
Feature/more mask files
#57
viklund
closed
8 years ago
0
Feature/vt for annotation
#56
viklund
closed
8 years ago
0
Feature/mult runner
#55
viklund
closed
8 years ago
0
Ability to run on several bamfiles
#54
viklund
closed
8 years ago
3
Screen events based on custom mask file
#53
viklund
closed
8 years ago
1
Hotfix/v0.2.1
#52
viklund
closed
8 years ago
0
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