Closed yfhuang7 closed 6 years ago
kendrakaiser
commented
6 years ago I'm having the same problem - it seems that it's this part "Error: package or namespace load failed for 'rwrfhydro' in namespaceExport(ns, exports): undefined exports: GetNldas2"
ChuliangXiao
commented
6 years ago devtools::install_github("NCAR/rwrfhydro")
Downloading GitHub repo NCAR/rwrfhydro@master
from URL https://api.github.com/repos/NCAR/rwrfhydro/zipball/master
Installing rwrfhydro
'/usr/lib64/R/bin/R' --no-site-file --no-environ --no-save --no-restore \
--quiet CMD INSTALL \
'/tmp/RtmpBJXS04/devtools1b452d74e470/NCAR-rwrfhydro-5a0b83e' \
--library='/home/xiao/Rpackages' --install-tests
* installing *source* package ‘rwrfhydro’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** tests
** preparing package for lazy loading
** help
*** installing help indices
converting help for package ‘rwrfhydro’
finding HTML links ... done
AddRouteLinkGage html
AllSame html
AsCharLongInt html
Bias html
BiasNorm html
CalcCOM html
CalcDailyGhcn html
CalcDateTrunc html
CalcDates html
CalcFdc html
CalcFdcPerf html
CalcFdcSpline html
CalcMeanMinrm html
CalcMeanNarm html
CalcModPerf html
CalcModPerfMulti html
CalcMonthDays html
CalcNoahmpFluxes html
CalcNoahmpWatBudg html
CalcRunningMean html
CalcSnodasCoords html
CalcStatCategorical html
CalcStatCont html
CalcStatsRS html
CalcWaterYear html
ChanObsToTimeSlice html
CheckConn html
ConvertRS2Stack html
ConvertStack2NC html
CreateBasinMask html
finding level-2 HTML links ... done
Rd warning: /tmp/RtmpBJXS04/devtools1b452d74e470/NCAR-rwrfhydro-5a0b83e/man/CreateBasinMask.Rd:43: missing link ‘ReadChrtgrid’
CumsumNa html
EditFrxstPts html
ExportGeogrid html
FillOutliers html
FindUsgsStns html
FlipLR html
FlipUD html
FormalsToDf html
GapFillRS html
GatherStreamInds html
GetCRN html
GetCoDwrData html
GetDomainCoordsProj html
GetFileStat html
GetGeogridIndex html
GetGeogridSpatialInfo html
GetGhcn html
GetGhcn2 html
GetGithubPat html
GetMODIS html
GetMultiNcdf html
GetMultiNcdfFile html
GetMultiNcdfVariable html
GetNWCSnowPoints html
GetNcdfFile html
GetNwmChannelOut html
GetPkgMeta html
GetPkgRawDataPath html
GetPoly html
GetProj html
GetRfc html
GetSiteHuc html
GetSnodasDepthSweDate html
GetSnodasPointTs html
GetSnotel html
GetStage4Files html
GetTimeZone html
GetUsgsHucData html
GetUsgsIvProduct html
ImproveHucMeta html
InsertRS html
Kge html
LoadMetaDB html
LsObjects html
MkDischargeVariance html
MkFrcAdjFromLdasin html
MkNcdf html
MkNudgingParams html
MkUsgsTimeSlice html
Model3SdErrClimTaper html
Model3SdErrPctErrPlusQntlIncpt html
NamedList html
Nse html
NseLog html
NtwKReExToNcdf html
PadRange html
PlotFdc html
PlotFdcCompare html
PlotFluxCompare html
PlotPrettyUsgs html
PlotWatBudg html
PolyToRaster html
PosixOrigin html
PrettyUsgs html
PutSnodasCoordsNcdf html
PutSnodasNcdf html
QueryHaveSite html
QuerySiteData html
QuerySiteInfo html
QuerySiteName html
QuerySiteProd html
RBFlash html
ReExpNetwork html
ReExpressRouteLink html
ReIndexRouteLink html
ReadAmeriflux html
ReadAmerifluxCSVOldFormat html
ReadAmerifluxNCOldFormat html
ReadChrtout html
Rd warning: /tmp/RtmpBJXS04/devtools1b452d74e470/NCAR-rwrfhydro-5a0b83e/man/ReadChrtout.Rd:63: missing link ‘ReadChrtgrid’
ReadCoDwrGage html
ReadFrxstPts html
Rd warning: /tmp/RtmpBJXS04/devtools1b452d74e470/NCAR-rwrfhydro-5a0b83e/man/ReadFrxstPts.Rd:36: missing link ‘ReadChrtgrid’
ReadGwOut html
Rd warning: /tmp/RtmpBJXS04/devtools1b452d74e470/NCAR-rwrfhydro-5a0b83e/man/ReadGwOut.Rd:33: missing link ‘ReadChrtgrid’
ReadGwbuckFile html
ReadLakeout html
ReadLdasoutAll html
Rd warning: /tmp/RtmpBJXS04/devtools1b452d74e470/NCAR-rwrfhydro-5a0b83e/man/ReadLdasoutAll.Rd:60: missing link ‘ReadChrtgrid’
ReadLdasoutWb html
Rd warning: /tmp/RtmpBJXS04/devtools1b452d74e470/NCAR-rwrfhydro-5a0b83e/man/ReadLdasoutWb.Rd:79: missing link ‘ReadChrtgrid’
ReadLinkFile html
ReadNcTimeSlice html
ReadRouteLink html
Rd warning: /tmp/RtmpBJXS04/devtools1b452d74e470/NCAR-rwrfhydro-5a0b83e/man/ReadRouteLink.Rd:20: missing link ‘ReadChrtgrid’
ReadRtout html
Rd warning: /tmp/RtmpBJXS04/devtools1b452d74e470/NCAR-rwrfhydro-5a0b83e/man/ReadRtout.Rd:64: missing link ‘ReadChrtgrid’
ReadSnodasDepthSweDate html
ReadUsgsGage html
ReadWtFile html
ReshapeMultiNcdf html
Rmse html
RmseNorm html
RotateCcw html
RotateCw html
RoundMinutes html
SaveHucData html
SelectGhcnGauges html
SmoothStack html
StdLon html
SubsetWts html
TransTz html
TransUsgsProdStat html
TranslateStateCodes html
UpdateGwbuckFile html
UpdateLinkFile html
UpdateWtFile html
VisualizeChanNtwk html
VisualizeDomain html
VisualizeRouteLink html
VisualizeSpatial html
VisualizeSubsetStream html
WhichMulti html
WriteDischargeObsSeq html
WriteNcTimeSlice html
amfMeta html
gages2Attr html
gages2AttrPlus html
lsOS html
multiplot html
ncdump html
rfc html
rwrfhydro html
snotelMeta html
sub-.prettyUsgs html
subset.prettyUsgs html
timeZone html
tzLookup html
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error: package or namespace load failed for ‘rwrfhydro’ in namespaceExport(ns, exports):
undefined exports: GetNldas2
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/xiao/Rpackages/rwrfhydro’
Installation failed: Command failed (1)
jmccreight
commented
6 years ago Hi all, sorry about this. I didnt notice it last time I updated. Would someone mind cloning the repo and devtools:install() it? If that fails, then remove the GetNldas2 line from the NAMESPACE file in the top level and try again. Roxygen sometimes leaves stale bits in there.
I could try this, but it will be several days. My R legs are rusty at the moment.
ChuliangXiao
commented
6 years ago @jmccreight
Yes, it worked as you suggested.
After GetNldas2 is removed from NAMESPACE of the repo, rwrfhydro is installed by devtools::install("rwrfhydro").
yfhuang7
commented
6 years ago Yes, I can install it after removing the GetNldas2 line from the NAMESPACE. Thanks! :D
jmccreight
commented
6 years ago Who wants submit a pull request of the fix so I dont have to redo it?
If your local rwrfhydro is a clone of your fork (e.g. git remote -v shows origin git@github.com:<YOURFORK>/wrf_hydro_dart.git) then commit and push the change to your fork and issue a pull request.
If your local rwrfhydro is clone of upstream (e.g. git remote -v shows origin git@github.com:NCAR/wrf_hydro_dart.git), then I can offer you more assistance, if you are game to try.
jmccreight
commented
6 years ago thanks yufen! for PR #97.
Hi,
I met loading error while installing rwrfhydro, but I don't understand the error message (see below), it seems like it's the system problem. What can I do to install rwrfhydro successfully? Do I need certain version of R?
Thanks! yufen
devtools::install_github("NCAR/rwrfhydro") Downloading GitHub repo NCAR/rwrfhydro@master from URL https://api.github.com/repos/NCAR/rwrfhydro/zipball/master Installing rwrfhydro "C:/PROGRA~1/R/R-34~1.2/bin/x64/R" --no-site-file --no-environ --no-save --no-restore \ --quiet CMD INSTALL "C:/Users/Yu-Fen \ Huang/AppData/Local/Temp/RtmpigF4t3/devtools47c813eb6557/NCAR-rwrfhydro-5a0b83e" \ --library="C:/Users/Yu-Fen Huang/Documents/R/win-library/3.4" --install-tests