NCATS-Tangerine cq-notebooks issues

NCATS-Tangerine / cq-notebooks

Notebooks for answering competency questions

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added human similar proteins and the csv output

#60 putmantime closed 6 years ago
0
Tim cq1.2

#59 putmantime closed 6 years ago
0
Create Data_cleaning_merging_to_tables

#58 michaelkyu opened 6 years ago
0
Drug repurposing: use APIs for DOID-SNOMED traversal and for hposim

#57 cmungall opened 6 years ago
11
Finalized summary table

#56 putmantime closed 6 years ago
0
ammended summary table

#55 putmantime closed 6 years ago
0
QB1.14 Protein drug interactions

#54 stuppie opened 6 years ago
0
expanded notebook to FA effectors and associated

#53 realmarcin closed 6 years ago
0
FA GO notebook now includes table output

#52 realmarcin closed 6 years ago
0
QB1.2 Notebook

#51 putmantime closed 6 years ago
0
New Category "Genes with potential FA involvement"

#50 dnahotline opened 6 years ago
0
New genes with high probability of FA involvement

#49 dnahotline opened 6 years ago
0
add Gnomad/Exac

#48 mellybelly opened 6 years ago
2
Add new CQ notebook to examine March7

#47 mellybelly opened 6 years ago
0
consider adding more pathway/PPI sources

#46 mellybelly opened 6 years ago
0
QB2.3 Drug_Repurpose_By_Phenotype

#45 mbrush opened 6 years ago
0
Create a CQ that demonstrates OMIM ID to Gene ID

#44 cmungall opened 6 years ago
0
QB1.2_FA_gene_pathogenic_variant notebook status

#43 mbrush opened 6 years ago
0
QB2.2 Disease_phenotype_compendium notebook status

#42 realmarcin closed 3 years ago
1
adding notebooks for GO annotation matrix and disease phenotype creation

#41 realmarcin closed 6 years ago
0
QB2.1 GO_annotation_compendium notebook status

#40 mbrush closed 3 years ago
1
Adding new FA gene

#39 cmungall closed 6 years ago
0
QB1.7 variant compensatory changes notebook status #23

#38 stuppie opened 6 years ago
2
OrangeQ1.6_Coexpression_Under_FA: gene expression pattern comparison

#37 mellybelly opened 6 years ago
0
OrangeQ1.5 Regulatory_Motif_Signature: Query for overall variation in the upstream regions

#36 mellybelly opened 6 years ago
1
OrangeQ1.5 Regulatory_Motif_Signature: Query for evolutionarily conserved motifs and ordering

#35 mellybelly opened 6 years ago
0
first working version of human GO annotation compendium creation and …

#34 realmarcin closed 6 years ago
0
QB1.1_GO_Annot Notebook Status

#33 mbrush closed 3 years ago
1
Orange CQ3.2_Representative_Signs_and_Symptoms Notebook Status

#32 mbrush closed 6 years ago
1
Orange CQ3.1_ClinicalTrial_Generalizability Notebook Status

#31 mbrush closed 6 years ago
1
Orange CQ2.7_Positive_Control_Drugs Notebook Status

#30 mbrush opened 7 years ago
0
Orange CQ2.4_Drug_Gene_Path Notebook Status

#29 mbrush opened 7 years ago
0
Orange CQ1.7_Phenotype_Similarity Notebook Status

#28 mbrush opened 7 years ago
0
Orange CQ1.6_Coexpression_Under_FA Notebook Status

#27 mbrush opened 7 years ago
0
Orange CQ1.5_Regulatory_Motif_Signature Notebook Status

#26 mbrush opened 7 years ago
0
Orange CQ1.4_Transcriptional_Regulators Notebook Status

#25 mbrush opened 7 years ago
0
Orange CQ1.2_GO_Functional_Similarity Notebook Status

#24 mbrush opened 7 years ago
0
QB1.4_Post_Trans_Mod notebook status

#23 mbrush opened 7 years ago
4
GreenTeamQ1_Asthma_Outcomes_PM2.5_Ozone_Exposures Not working

#22 kevinxin90 opened 7 years ago
0
Orange CQ1.1_PPI_Network Notebook Status

#21 mbrush opened 7 years ago
0
Organizion of CQ folders

#20 mbrush closed 6 years ago
1
Moves swagger-codegen-tutorial.md into swagger-utils/ Adds codegen-vs-bravado.py example.

#19 DoctorBud closed 7 years ago
0
update notebook

#18 coverbytaylor closed 7 years ago
0
edits

#17 coverbytaylor closed 7 years ago
0
adding new directory

#16 coverbytaylor closed 7 years ago
0
organizing notebook

#15 coverbytaylor closed 7 years ago
0
added questions

#14 coverbytaylor closed 7 years ago
0
pull

#13 coverbytaylor closed 7 years ago
0
pull

#12 coverbytaylor closed 7 years ago
0
Minor fixes to typos unrelated to the computations themselves

#11 DoctorBud closed 7 years ago
0