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NCBI-Hackathons
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EDirectCookbook
MIT License
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How to print an empty field if no data is found?
#63
panosioannidis
opened
1 year ago
0
How to merge data from two different databases into one output file?
#62
panosioannidis
closed
1 year ago
3
Get coding sequences for a gene id
#61
snk5040
opened
1 year ago
2
Retrieve all metadata from edirect that is accessible from SRArunTable
#60
kray02
opened
1 year ago
0
Download Symbol via EFetch
#59
mapauley
opened
2 years ago
9
Downloading FASTA Records with GI Number via efetch?
#58
mapauley
opened
2 years ago
2
Download 1,000 Random Human RefSeq Transcripts
#57
mapauley
opened
2 years ago
2
getting the fastq reads from accession ids
#56
Jigyasa3
opened
2 years ago
1
Retrieve bioproject IDs and SRA IDs from PMIDs?
#55
Jigyasa3
opened
2 years ago
3
Overall design
#54
xexpanderx
opened
3 years ago
0
Citation List
#53
smartdance
opened
3 years ago
0
curl: (60) SSL certificate problem: unable to get local issuer certificate
#52
ShuqingL
opened
3 years ago
0
Adding a recipe to get all assemblies associated with a bioproject
#51
linsalrob
opened
4 years ago
1
Retrieve Bioproject IDs and related SRAs within given timerange
#50
tbmz
closed
4 years ago
2
The importance of adding < /dev/null with while loops
#49
nickp60
opened
4 years ago
0
Get Transcription Factors ChiP-seq experiments
#48
Fnyasimi
opened
4 years ago
0
get nucleotide sequence by gene ID
#47
plasmid02
opened
4 years ago
12
Get entries that have specific keyword in the tag "Isolation source"
#46
jeagull
opened
5 years ago
0
The efetch command reported BioSamples’ Attributes completely different from those displayed at the NCBI website
#45
lauraht
opened
5 years ago
2
The “-if” and “-unless” statements in xtract did not seem to work for me when extracting Attributes in BioSample
#44
lauraht
opened
5 years ago
3
How to use xtract to get <name value> pairs of all the attributes?
#43
lauraht
closed
5 years ago
0
API Keys
#42
linsalrob
opened
5 years ago
1
Software Version
#41
linsalrob
opened
5 years ago
1
Extracting Pubmed ID (PMID) for a list of refseq accession number
#40
tauqeer9
opened
5 years ago
2
Get publication counts per gene per year
#39
sanyalab
opened
5 years ago
6
HTML code in Pubmed "title" field
#38
cmonnom
opened
5 years ago
0
EDirect pulling [crdt] against [entrez] to get all PMID's for 2017 where they don't match
#37
tomlaheyh
opened
5 years ago
0
EDirect installation requires LWP::Protocol::https
#36
linsalrob
opened
6 years ago
1
added formatting
#35
lwagnerdc
closed
6 years ago
0
added recipe for retrieving pmc citations of pmid
#34
lwagnerdc
closed
6 years ago
0
geoprofiles data format
#33
rbutleriii
opened
6 years ago
0
Get DNA Sequences for a bacterial protein with a given name
#32
MoamenElmassry
opened
6 years ago
0
How to limit esearch results retmax or similar?
#31
cmdcolin
opened
6 years ago
4
Containerize / homebrew installation
#30
tom-dyar
opened
6 years ago
0
Get all Eukaryote mitochondrial markers
#29
DCGenomics
opened
6 years ago
1
Runs from another Run ID
#28
linsalrob
closed
6 years ago
0
using xtract to get SRA ids and BioProject ids
#27
pedrorvc
opened
6 years ago
2
Formatting and missing value issue in xtract metadata from bioproject
#26
ghost
closed
6 years ago
1
Get child nodes from NCBI taxonomy
#25
DCGenomics
opened
6 years ago
4
Added first author/equal contrib script
#24
mikeadavidson
closed
6 years ago
0
Added two scripts
#23
mikeadavidson
closed
6 years ago
0
Extract all MeSH Headings from a given PMID
#22
DCGenomics
closed
6 years ago
1
Added taxon to RefSeq genome FASTA files example
#21
ucpete
opened
7 years ago
0
Adding how to get the size of the SRA datasets in bp
#20
linsalrob
closed
7 years ago
0
assembly field SB
#19
linsalrob
opened
7 years ago
2
Get filesizes for a list of SRA files
#18
tobsecret
opened
7 years ago
4
extract sequence ranges from bacterial genomes
#17
DCGenomics
opened
7 years ago
5
Extract biological regions from an NCBI .gff3 file
#16
DCGenomics
opened
7 years ago
1
How to find amino acid changes from SNPs?
#15
anmolv07
opened
7 years ago
2
Go from rs# to Gene Ontology
#14
cbauer82
opened
7 years ago
3
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