NCBI-Hackathons Master_gff3_parser issues - Githubissues

NCBI-Hackathons / Master_gff3_parser

Convert sequence IDs between ucsc/refseq/genbank

MIT License

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issues

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fix link for format description of gff3

#18 hsiaoyi0504 opened 6 years ago
0
seqconv adds assembly_report.txt line to the gtf file

#17 vkkodali closed 7 years ago
1
test_cli.py

#16 manny809dr opened 7 years ago
2
the assembly_report URL is printed to STDOUT

#15 childers opened 7 years ago
0
Ensembl GTF features with no version may fail to convert

#14 childers opened 7 years ago
0
Add IDs (not just convert)

#13 david4096 opened 7 years ago
1
Testing the main mouse assembly rs to gb

#12 childers closed 7 years ago
5
alt mouse failing

#11 childers opened 7 years ago
2
Semi Successful test for USCS cat 4 to refseq ids

#10 childers opened 7 years ago
3
Test successful NCBI Cat 8.0 to UCSC

#9 childers closed 7 years ago
3
seqconv_debugging

#8 manny809dr opened 7 years ago
0
problem testing a UCSC file

#7 childers opened 7 years ago
2
setting UC for output format gives gb formatted ids

#6 childers opened 7 years ago
0
Add files via upload

#5 Nur-Taz closed 7 years ago
0
Guessing the ID source in Target fields

#4 childers opened 7 years ago
1
Additional thoughts on format guessing

#3 childers opened 7 years ago
0
Additional examples

#2 childers closed 7 years ago
4
Guess format gff

#1 childers closed 7 years ago
0