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NCBI-Hackathons / PyClonal

Jupyter Notebooks to analyze T-cell Receptor Sequencing
MIT License
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idea for notebook #3

Open michellemiron opened 6 years ago

michellemiron commented 6 years ago

what about cleaning up visualization of the notebook by writing python script to be a wrapper to load in all the needed packages in the notebook. See this link that outlines an example of what I'm talking about: https://medium.com/ibm-data-science-experience/tidy-up-your-jupyter-notebooks-with-scripts-5dd6ac8d33aa

eco32i commented 6 years ago

That sounds like a good idea. What code (in which notebooks) is ready to be abstracted away?

michellemiron commented 6 years ago

There are two notebooks to be abstracted: Diversity Analysis Demo.ipynb Overlap Analysis Demo.ipynb

The part which i think is ready is the first code chunk in both which loads all the required pacakges. You could try on one like "Overlap Analysis Demo.ipynb" notebook and see what happens?