search

NHMDenmark / Mass-Digitizer

Common repo for the DaSSCo team
Apache License 2.0
1 stars 0 forks source link

Update to GREL script - collection name #411

Closed jlegind closed 11 months ago

jlegind commented 11 months ago

Issue

The postprocessing step did not correctly update the collection name derived from the storage location.

The collection manager decides the collection name and we have to follow suit.

The OpenRefine GREL script helps us to get the App records ready for Specify workbench ingestion.

Risk

The risk bound to this issue is that we must have conformity in the record data or else queries parameters become uncertain since the property searched on might have multiple values.

Solution

Update the GREL script with the step needed for the right collection string for NHMD Vascular Plants which is now: "C-Danish Herbarium"

The Script lives here: https://github.com/NHMDenmark/Mass-Digitizer/blob/main/OpenRefine/post_processing.json

FedorSteeman commented 11 months ago

This is not necessary, since with each release of the app the predefined data is regenerated on the basis of the current status of storage node names in Specify using https://github.com/NHMDenmark/Mass-Digitizer/blob/main/MassDigitizer/sql/specify/ExtractStorageLocations.sql

For those files generated during earlier versions of the app, the collection names will just have to be fixed manually before import.

Adaptation of the script to the new situation will be covered by #398