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NHPatterson / napari-wsireg

Whole slide image registration through wsireg in napari.
BSD 3-Clause "New" or "Revised" License
11 stars 3 forks source link

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napari-wsireg

Alt text

Plugin to perform whole slide image registration based on wsireg.

Please see wsireg for more info image formats, features and how registration works.

Usage

Add images from napari layers or from file and set up "registration paths" between them. OME-TIFF is best supported format.

Constructed registration graph in action

Alt Text

Solid arrows: direct registration between two images.

Dashed arrows: indriect registration paths.

Installation

You can install napari-wsireg via pip:

pip install napari-wsireg

To install latest development version :

pip install git+https://github.com/nhpatterson/napari-wsireg.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "napari-wsireg" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.