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NHPatterson
/
wsireg
multimodal whole slide image registration in a graph structure
MIT License
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use opencv-python-headless rather than opencv-python
#74
NHPatterson
closed
2 months ago
0
Fix error when passing a boolean mask
#73
grst
opened
3 months ago
1
how to apply manually matched point pairs?
#72
inyeopjang
opened
5 months ago
0
GeoJSON parsing error in Qupath for files after applying registration
#71
leorrose
opened
5 months ago
0
Output resolution is not respected
#70
leorrose
opened
6 months ago
2
Remove support for AICSIMAGEIO
#69
NHPatterson
closed
7 months ago
0
Concatenating transformations across separate modalities
#68
leorrose
opened
9 months ago
0
Asymmetrical images
#67
leorrose
opened
10 months ago
1
Output file generated by transform_images is corrupted.
#66
grst
closed
10 months ago
2
Initial transformation
#65
JingyeWang1998
opened
1 year ago
1
Citation
#64
KidElectric
opened
1 year ago
1
register_images() hangs when calling UpdateLargestPossibleRegion()
#63
conradfoo
closed
1 year ago
3
Copy wsireg alignment scheme to rest of the channels from same modality?
#62
BokaiZhu
closed
1 year ago
2
unpin ITK with fix of `itk-elastix`, other small bug fixes
#61
NHPatterson
closed
2 years ago
0
Fix configuration save to include merge modalities
#60
NHPatterson
closed
2 years ago
0
PyCapsule_Import "_ITKCommonPython._C_API" is not valid
#59
BioinfoTongLI
closed
2 years ago
4
error calling wsi-reg on napari on windows
#58
alcrevenna
closed
2 years ago
2
Add convenience functionality to visualize registered images in `vizarr`/ `napari`
#57
NHPatterson
opened
2 years ago
0
error on napari plugin
#56
alcrevenna
closed
2 years ago
5
Fix CI errors around dask with test fixtures images.
#55
NHPatterson
closed
2 years ago
0
make config writing error-free, and make console script work
#54
NHPatterson
closed
2 years ago
0
Black formatting on last PR
#53
NHPatterson
closed
2 years ago
0
Add plotting
#52
NHPatterson
closed
2 years ago
0
keep shape spacing information after transformation
#51
NHPatterson
closed
2 years ago
0
Failed Alignment of sequential stained samples
#50
rjesud
closed
2 years ago
9
Register more than 2 images simultaneously?
#49
ajr82
closed
2 years ago
2
Update docs with more info
#48
NHPatterson
closed
2 years ago
0
Fix bugs in mask drawing from geojson and reading single geometry geojson
#47
NHPatterson
closed
2 years ago
0
Upgrade RegShapes to QP geojson format
#46
NHPatterson
closed
2 years ago
0
Refactoring major classes and reorganize docs and add more docstrings
#45
NHPatterson
closed
2 years ago
0
Error after installing
#44
alcrevenna
closed
2 years ago
4
Refactor and rewrite tiled image transform using `Tiler`
#43
NHPatterson
closed
2 years ago
0
Major refactor of the RegImage class for extensibility
#42
NHPatterson
closed
2 years ago
0
Remove modality
#41
NHPatterson
closed
2 years ago
0
update tifffile and zarr versions
#40
NHPatterson
closed
2 years ago
0
Update CI for automated pypi deployment
#39
NHPatterson
closed
2 years ago
0
refactor to project for easier changes
#38
NHPatterson
closed
2 years ago
0
Add draw_mask method to RegShapes
#37
NHPatterson
closed
2 years ago
0
Add ability to mix data types in final merger
#36
NHPatterson
closed
2 years ago
1
add RegTransformSeq to chain transformations
#35
NHPatterson
closed
2 years ago
0
integrate pydantic as a model for image preprocessing parameters, enum for registration model choices
#34
NHPatterson
closed
2 years ago
0
Cast all point data to double for operations in SimpleITK
#33
NHPatterson
closed
2 years ago
0
write with geojson extension
#32
NHPatterson
closed
2 years ago
0
Shapes and QuPath
#31
Michael-L-Miller
closed
2 years ago
10
Use `ome-types` to build OME data
#30
NHPatterson
opened
2 years ago
6
Add logo
#29
NHPatterson
closed
2 years ago
0
Mixing dtypes / RGB in merged image files
#28
NHPatterson
closed
2 years ago
0
fix transformation writing for attachment modalities closes #26
#27
NHPatterson
closed
2 years ago
0
Saving transformations doesn't work with `attachment_modalities`
#26
NHPatterson
closed
2 years ago
0
Fix reading individual channels or select channels in zeiss czi files
#25
NHPatterson
closed
2 years ago
0
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