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NIAID-Data-Ecosystem
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nde-crawlers
Harvesting infrastructure to collect and standardize dataset and computational tool metadata
Apache License 2.0
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[SOURCE] Add NICHD Data and Specimen Hub (DASH)
#99
flaneuse
closed
1 year ago
0
Microbiome
#98
jal347
closed
1 year ago
0
VDJ new source
#97
DylanWelzel
closed
1 year ago
0
NCBI_PMC FTP Harvesting Method
#96
DylanWelzel
closed
1 year ago
0
Hubmap new data source
#95
DylanWelzel
closed
1 year ago
0
added phrase suggester for staging
#94
jal347
closed
1 year ago
0
[SOURCE] Add VDJ Server datasets
#93
flaneuse
closed
1 year ago
1
[SOURCE] Add integrated Human Microbiome Project data
#92
flaneuse
opened
1 year ago
0
[Normalization] Fix and link the `funding.identifer` entries using NIH RePORTER API
#91
flaneuse
opened
1 year ago
1
[Normalization] Use PubTator API to normalize `species`, `infectiousAgent`, `healthCondition`
#90
flaneuse
closed
4 months ago
8
New Source: Human Cell Atlas
#89
DylanWelzel
closed
1 year ago
0
[SOURCE] Add HuBMAP datasets
#88
flaneuse
closed
1 year ago
0
[SOURCE] Add LINCS Data Portal metadata
#87
flaneuse
closed
5 months ago
2
New Source Qiita
#86
DylanWelzel
closed
1 year ago
0
Filter out deleted Zenodo entries
#85
flaneuse
closed
5 months ago
1
[SOURCE] Add Qiita microbiota datasets
#84
flaneuse
closed
1 year ago
1
[SOURCE] Add metadata from Observed Antibody Space
#83
flaneuse
closed
1 year ago
1
WorkflowHub new source
#82
DylanWelzel
closed
1 year ago
0
csv_helper
#81
DylanWelzel
closed
1 year ago
0
OAI-PMH Helper, Biocontainers source
#80
DylanWelzel
closed
1 year ago
0
OAI-PMH Helper, Biocontainers source
#79
DylanWelzel
closed
1 year ago
0
Multiple Source Updates
#78
DylanWelzel
closed
1 year ago
0
NCBI_SRA Refactor
#77
DylanWelzel
closed
1 year ago
0
Biotools, Dockstore
#76
DylanWelzel
closed
1 year ago
0
[metadata improvement] add healthCondition to ImmPort data
#75
flaneuse
opened
1 year ago
1
[metadata improvement] Save `Program Name` in ImmPort
#74
flaneuse
opened
1 year ago
1
Bioconductor
#73
DylanWelzel
closed
1 year ago
0
finished dryad
#72
jal347
closed
1 year ago
0
Metadata spring cleaning
#71
flaneuse
closed
1 year ago
0
Access Clinical Trials update w/ Seven Bridges author fix
#70
DylanWelzel
closed
1 year ago
0
NCBI SRA
#69
DylanWelzel
closed
1 year ago
0
Link AccessClinicalTrials "Adaptive COVID-19 Treatment Trials" together
#68
flaneuse
closed
1 year ago
0
NCBI SRA
#67
DylanWelzel
closed
1 year ago
0
Harvest Protein Data Bank metadata
#66
flaneuse
opened
1 year ago
0
Crawl bioconductor
#65
flaneuse
closed
1 year ago
0
Create Dataverse crawler
#64
flaneuse
opened
1 year ago
0
Figshare caching
#63
DylanWelzel
closed
1 year ago
0
NCBI citation object update
#62
DylanWelzel
closed
1 year ago
0
NCBI PMC Datasets OAI-PMH w/ caching
#61
DylanWelzel
closed
1 year ago
0
acd_niaid added hasPart and usageInfo
#60
DylanWelzel
closed
1 year ago
0
description update
#59
DylanWelzel
closed
1 year ago
0
Nde analyzer
#58
jal347
closed
1 year ago
0
Api cache v2
#57
jal347
closed
2 years ago
0
Iterative improvement to the OmicsDI crawler
#56
flaneuse
opened
2 years ago
0
Api cache
#55
jal347
closed
2 years ago
0
Create bio.tools crawler
#54
flaneuse
closed
1 year ago
1
Reframedb
#53
DylanWelzel
closed
2 years ago
0
Mendeley
#52
DylanWelzel
closed
2 years ago
0
Mendeley
#51
DylanWelzel
closed
2 years ago
0
Create SRA Crawler
#50
flaneuse
closed
1 year ago
0
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