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NIAID-Data-Ecosystem
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nde-crawlers
Harvesting infrastructure to collect and standardize dataset and computational tool metadata
Apache License 2.0
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Mendeley
#52
DylanWelzel
closed
2 years ago
0
Mendeley
#51
DylanWelzel
closed
2 years ago
0
Create SRA Crawler
#50
flaneuse
closed
1 year ago
0
Potentially add funding info to OmicsDI
#49
flaneuse
closed
4 months ago
1
Import Vivli metadata
#48
flaneuse
closed
1 year ago
0
Import reframeDB metadata
#47
flaneuse
closed
2 years ago
0
Add original source metadata to OmicsDI
#46
flaneuse
closed
2 years ago
0
Expand DDE harvester to include NIAID:ComputationalTools
#45
flaneuse
closed
2 years ago
1
Figshare
#44
DylanWelzel
closed
2 years ago
0
De-duplicate / combine records between NCBI GEO + OmicsDI
#43
flaneuse
closed
4 months ago
9
Figshare
#42
DylanWelzel
closed
2 years ago
0
Cache
#41
jal347
closed
2 years ago
0
De-duplicate / combine overlapping records for Mendeley
#40
flaneuse
closed
1 year ago
2
Potentially augment Zenodo records
#39
flaneuse
opened
2 years ago
0
Improve searchability by grant numbers
#38
flaneuse
closed
1 year ago
3
Import metadata from PMC
#37
flaneuse
opened
2 years ago
0
Sb public apps
#36
DylanWelzel
closed
2 years ago
0
Import ClinEpiDB metadata
#35
flaneuse
closed
1 year ago
0
Niaid
#34
DylanWelzel
closed
2 years ago
0
Import BioContainers tool/workflow metadata
#33
flaneuse
closed
1 year ago
1
Import WorkflowHub workflow metadata
#32
flaneuse
closed
1 year ago
1
Import Dockstore tools
#31
flaneuse
closed
1 year ago
0
Manually curate tools collected by NIAID
#30
flaneuse
opened
2 years ago
0
Create a crosswalk between the NDE schemas and common schemas
#29
flaneuse
closed
1 year ago
1
Create hierarchical searching based on ontologies
#28
flaneuse
opened
2 years ago
2
Map values in each parser to controlled vocabularies
#27
flaneuse
closed
1 year ago
1
Create a reporter to track the status of a data build
#26
flaneuse
opened
2 years ago
0
Production release 1 metadata harvesting
#25
flaneuse
closed
1 year ago
0
Set up automated AWS server launch templates
#24
flaneuse
opened
2 years ago
0
Better document the transformations to convert a source to the NDE schema
#23
flaneuse
opened
2 years ago
0
Refactor common NDE, RDP, outbreak pipelines
#22
flaneuse
opened
2 years ago
0
Set up API request tracking / monitoring
#17
flaneuse
opened
2 years ago
0
Improve the robustness of the API infrastructure
#18
flaneuse
closed
1 year ago
0
Customize query behavior for NDE API
#16
flaneuse
closed
1 year ago
1
Add jsonschema validation for larger data sources before going through Hub build
#15
flaneuse
opened
2 years ago
1
Set up automated API testing
#14
flaneuse
opened
2 years ago
0
Create API documentation website
#13
flaneuse
closed
2 years ago
0
Implement caching for sources with large number of records
#12
flaneuse
closed
1 year ago
0
Add scheduled updates for parsers
#11
flaneuse
closed
2 years ago
0
Automated updates of metadata harvesting
#19
flaneuse
opened
2 years ago
0
Create API documentation
#20
flaneuse
closed
1 year ago
0
Improve / augment metadata
#21
flaneuse
closed
1 year ago
0
Import AccessClinicalData@NIAID metadata
#10
flaneuse
closed
2 years ago
0
Import Data Discovery Engine metadata
#9
flaneuse
closed
2 years ago
0
Import VEuPathDB metadata
#8
flaneuse
closed
1 year ago
0
Import Figshare metadata
#7
flaneuse
closed
2 years ago
0
Import Omics DI metadata
#6
flaneuse
closed
2 years ago
0
Import NCBI GEO metadata
#5
flaneuse
closed
2 years ago
0
Import ImmPort metadata
#4
flaneuse
closed
2 years ago
0
Import Zenodo
#3
flaneuse
closed
2 years ago
0
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