NIEHS / targets_PrestoGP

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target-PrestoGP A targets pipeline for demonstrating the use of PrestoGP

General Steps

  1. Merge Calculated Covariates
  2. Exploratory Analysis of Covariates
    • Maps of Covariates
    • Histograms
    • Correlation Matrix
  3. Merge Covariates
  4. Save covariates as qs or fst file
  5. Run PrestoGP
    • Subset Test Locally
    • geo cluster setup
    • Run PrestoGP on geo cluster
    • Spatiotemporal Cross-Validation (branches)
    • Model Selection
  6. Save PrestoGP Results
  7. Exploratory Analysis of PrestoGP Results
    • Maps of PrestoGP Results
    • Histograms
    • Correlation Matrix
  8. Post-Processing of PrestoGP Results
    • Data Formats for sharing
    • Areal Summarization
    • Visualization

Side Option

  1. Make PrestoGP into a parsnip model