DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation. This is both a GUI and command line tool. The configurable pipeline includes image/diffusion information check, padding/Cropping of data, slice-wise, interlace-wise and gradient-wise intensity and motion check, head motion and Eddy current artifact correction, and DTI computing.
You can find the necessary environment to build the software in Dockerfile.
Use below command in source directory to build docker image (Currently having only CentOS7 image).
$ docker build . -t <image-name>
$ docker run --rm -it -v $PWD/../:/work -w /work <image-name> See License.txt
Find the tool on NITRC