Milkys2_pc
R scripts and Excel templates for (1) fetching data to use in Milkys2 on Jupyterhub, and (2) post-processing files created in Milkys2 on Jupyterhub
- the scripts here are all numbered 8xx to avoid overlapping with the scripts in Milkys2 on Jupyterhub
Script overview
801-810: Scripts for reading data from NIvabase or Excel
811-820: Scripts for importing (inserting) data into Nivabase
821-830: Various Nivabase-related
831-840: Various Vannmlijø-related
841-850: Scripts for submitting data to ICES
851-860: Not used (yet)
861-870: Various: making data files for co-workers/course, checking, testing
871-880: Not used (yet)
881-890: Not used (yet)
891-899: Not used (yet)
Data flows
Data from NILU
- Gotten by mail in excel: Folder 'Input_files_2020'
- Get data from excel: 808
- Insert in Nivabase: 812 + 814
- Thereafter these data will be included when data is drawn from Nivabase using script 802
Data for biological effects / PAH metabolites in cod
- Gotten by mail in excel: Folder 'Input_files_2020'
- Get data from excel and insert in Nivabase: 815
- Thereafter these data will be included when data is drawn from Nivabase using script 802
Data for imposex etc.
- Data in excel on K,
K:/Prosjekter/Sjøvann/JAMP/2020/opparbeiding/Snegl - Get data from excel and insert in Nivabase: 813
- Thereafter these data will be included when data is drawn from Nivabase using script 802
Labware sample data
- Downloading data: 801
- Used in 811, 812, 813, 814, 815
Coupling data from excel to existing samples in Nivabase
(from DHJ's powerpoint 'CEMP database structures.pptx', see here)
