NKI-AI dlup issues - Githubissues

NKI-AI / dlup

Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute

Apache License 2.0

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Use dynamic annotation reader and writers

#255 jonasteuwen closed 2 months ago
0
Revert "Implement WsiAnnotations in C++"

#254 jonasteuwen closed 2 months ago
1
Multithreaded TIFF writer

#253 jonasteuwen closed 3 weeks ago
1
Implement WsiAnnotations in C++

#252 jonasteuwen closed 2 months ago
2
Extend dunder methods and code simplification for annotations

#251 BPdeRooij closed 3 months ago
1
Feature/c++ tiffwriter

#250 jonasteuwen closed 3 months ago
0
Feature/c tiffwriter

#249 jonasteuwen closed 3 months ago
1
Multiple annotation output (serialization) formats

#248 jonasteuwen closed 1 month ago
1
Be more graceful when libvips or openslide is not available

#247 jonasteuwen closed 1 month ago
1
Annotation filter bugfix

#246 EricMarcus-ai closed 3 months ago
1
Allow annotation files with raster type (yet not supported)

#245 jonasteuwen closed 3 months ago
1
v0.7 tracking

#244 jonasteuwen closed 1 month ago
1
Feature/v0.7

#243 jonasteuwen opened 4 months ago
1
Feature/speedup masking

#242 jonasteuwen closed 4 months ago
1
Fix annotations not being cropped

#241 jonasteuwen closed 4 months ago
0
z-index is not imported or exported with GeoJSONs

#240 BPdeRooij closed 1 month ago
3
`intersect_with_box` is not performed on filtered annotations in `WsiAnnotations`

#239 BPdeRooij closed 4 months ago
0
Properly close open file handlers with PYVIPS image backend

#238 AjeyPaiK closed 4 months ago
3
SlideImage doesn't close file handlers with PYVIPS backend

#237 AjeyPaiK closed 4 months ago
0
Implement proper serialization of `dlup.annotations.Polygon` object to ensure correct pickling

#236 AjeyPaiK closed 4 months ago
0
Pickling of `dlup.annotation.Polygon` doesn't work

#235 AjeyPaiK closed 4 months ago
0
Bugfix/multiclass flag

#234 AjeyPaiK closed 4 months ago
0
`ConvertAnnotationsToMask` breaks

#233 AjeyPaiK closed 4 months ago
0
Feature/multiclass annotations

#232 jonasteuwen closed 5 months ago
1
v0.5 tracking

#231 jonasteuwen closed 4 months ago
0
Add grid_local_index to output sample of TiledWsiDataset

#230 VanessaBotha closed 2 months ago
1
Incorrect grid order of grid_local_coordinates in TiledWsiDataset

#229 VanessaBotha closed 1 week ago
2
Add color and z-index to annotations, support multiclass output

#228 jonasteuwen closed 4 months ago
1
version 1.0 tracking

#227 jonasteuwen closed 3 weeks ago
2
Use vips.Image rather than PIL.Image.Image

#226 jonasteuwen closed 5 months ago
0
Enlarge scope backends

#225 jonasteuwen closed 6 months ago
0
Fixes reading of multiple holes in annotations

#224 moerlemans closed 4 months ago
1
Multiple holes in annotations are not read correctly

#223 moerlemans closed 2 months ago
3
If there are multiple polygons in the WsiAnnotation dlup now takes the sum of the area's

#222 moerlemans closed 7 months ago
3
Feature/remote backends

#221 jonasteuwen opened 8 months ago
2
pyhaloxml and actions update

#220 rharkes closed 8 months ago
0
Enlarge scope of possible backends

#219 jonasteuwen closed 8 months ago
0
Extend `ConvertAnnotationsToMask` features

#218 BPdeRooij closed 7 months ago
1
Custom properties for bounding boxes in GeoJSON

#217 BPdeRooij closed 7 months ago
4
When using read_region on an MRXS file the none tissue stuff becomes black

#216 moerlemans closed 10 months ago
1
Fix annotation order of WsiAnnotations when sorting is None

#215 BPdeRooij closed 10 months ago
2
Unwanted label sorting in `WsiAnnotations`.

#214 BPdeRooij closed 10 months ago
0
Add an optional `colormap` parameter while writing tiff files.

#213 AjeyPaiK closed 11 months ago
0
Add `colormap` to TiffWriter

#212 AjeyPaiK closed 11 months ago
1
Remove multiscale dataset

#211 jonasteuwen closed 11 months ago
0
Design new multiscale dataset

#210 jonasteuwen closed 9 months ago
2
Remove mask utility

#209 jonasteuwen closed 11 months ago
0
Tiff Backend should support ICC profiles

#208 jonasteuwen closed 9 months ago
1
Implement mode in backends

#207 jonasteuwen closed 9 months ago
2
Implement ICC profile in the pyvips backend

#206 jonasteuwen closed 11 months ago
0