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NLeSC
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scriptcwl
Create cwl workflows by writing a simple Python script
https://scriptcwl.readthedocs.io/
Apache License 2.0
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Feature/limit python versions
#120
dsmits
closed
4 years ago
0
Added .idea and venv dir to gitignore
#119
dsmits
closed
4 years ago
1
Upgrade cwltool
#118
dsmits
opened
4 years ago
0
Specified maximum version for cwltool. Any higher is not compatible with
#117
dsmits
closed
4 years ago
2
Saving workflow fails because print_pack is called with too many arguments
#116
dsmits
closed
4 years ago
2
Importing WorkflowGenerator from scriptcwl does not work
#115
michaelbenayoun
closed
5 years ago
2
Wildcard/regex input filename argument handling example ?
#114
nyue
opened
5 years ago
1
Integrate cwldep?
#113
jvdzwaan
opened
5 years ago
0
Warn when saving step in working dir
#112
jvdzwaan
opened
5 years ago
0
Make CWL types constants for tab-completion
#111
jvdzwaan
opened
5 years ago
0
Possible to add inputs of type array or record?
#110
allanbolipata
closed
5 years ago
2
Validate workflows created in tests
#109
jvdzwaan
closed
5 years ago
0
Update cwltool
#108
jvdzwaan
closed
5 years ago
0
Add MultipleInputFeatureRequirement
#105
jvdzwaan
closed
5 years ago
0
Question about using scriptcwl
#104
ghost
closed
5 years ago
2
scatter_method is optional when scattering over a single parameter
#103
jvdzwaan
closed
5 years ago
0
parse commandline flags/options when validating workflow
#102
SpheMakh
opened
6 years ago
2
Have a list of step outputs as an input
#101
SpheMakh
closed
6 years ago
0
filenames with underscores raise a ValueError exception
#100
SpheMakh
closed
6 years ago
0
Add workflow input with CommandInputEnumSchema
#99
jvdzwaan
opened
6 years ago
1
Pass on EnvVarRequirement
#98
jvdzwaan
closed
6 years ago
1
Add motivation/design principles to documentation
#97
jvdzwaan
opened
6 years ago
0
Warn when adding a workflow input with the same name as a previously added workflow input
#96
jvdzwaan
closed
6 years ago
1
step with multiple outputs
#95
KerstenBreuer
closed
6 years ago
2
First load tools, then workflows to prevent warnings
#94
jvdzwaan
opened
6 years ago
1
Default value for boolean is incorrect
#93
jvdzwaan
closed
6 years ago
1
Remove inline saving of workflows
#92
jvdzwaan
closed
5 years ago
1
Optionally add prefix when loading steps from directory
#91
jvdzwaan
opened
6 years ago
0
Add documentation about running cwltool from jupyter notebooks
#90
jvdzwaan
opened
6 years ago
1
Add wf.run()
#89
jvdzwaan
opened
6 years ago
0
Expose to_dot() from cwltool to vizualize workflow in jupyter notebooks
#88
jvdzwaan
opened
6 years ago
0
Improve save interface
#87
jvdzwaan
closed
5 years ago
0
Add option to return cwl string instead of writing it to file directly
#86
jvdzwaan
closed
5 years ago
0
Adding a (sub)workflow twice leads to name clashes when saving inline
#85
jvdzwaan
closed
6 years ago
2
Recursive inline saving
#84
jvdzwaan
closed
6 years ago
4
Saving workflow with inline steps fails when shebang is missing from stepfile
#83
jvdzwaan
closed
6 years ago
1
Duplicate ids when saving steps inline
#82
jvdzwaan
closed
6 years ago
0
Add wf.set_documentation() to documentation
#81
jvdzwaan
closed
6 years ago
0
Add more examples of workflows created with scriptcwl
#80
jvdzwaan
opened
6 years ago
1
add add_inputs() function back as a deprecated function for backwards…
#79
rvanharen
closed
6 years ago
0
Fixes for pytests under windows
#78
bldevries-escience
closed
6 years ago
0
add method add_inputs to workflow generator
#77
jvdzwaan
closed
6 years ago
0
Ben fix pytest for windows
#76
bldevries-escience
closed
6 years ago
0
doc update
#75
rvanharen
closed
6 years ago
0
Fixing pytest and paths for windows
#74
bldevries-escience
closed
6 years ago
0
Ignore example files in codacy
#73
jvdzwaan
closed
6 years ago
0
Add input reference as str, rather than as Reference
#72
LourensVeen
closed
6 years ago
0
add_multiply_example.cwl contains local paths
#71
rvanharen
closed
6 years ago
0
code styling
#70
rvanharen
closed
6 years ago
0
Remove embedded shebang line and add test for inline save
#69
LourensVeen
closed
6 years ago
0
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