NLeSC scriptcwl issues - Githubissues

NLeSC / scriptcwl

Create cwl workflows by writing a simple Python script

https://scriptcwl.readthedocs.io/

Apache License 2.0

40 stars 9 forks source link

issues

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Feature/limit python versions

#120 dsmits closed 4 years ago
0
Added .idea and venv dir to gitignore

#119 dsmits closed 4 years ago
1
Upgrade cwltool

#118 dsmits opened 4 years ago
0
Specified maximum version for cwltool. Any higher is not compatible with

#117 dsmits closed 4 years ago
2
Saving workflow fails because print_pack is called with too many arguments

#116 dsmits closed 4 years ago
2
Importing WorkflowGenerator from scriptcwl does not work

#115 michaelbenayoun closed 5 years ago
2
Wildcard/regex input filename argument handling example ?

#114 nyue opened 5 years ago
1
Integrate cwldep?

#113 jvdzwaan opened 5 years ago
0
Warn when saving step in working dir

#112 jvdzwaan opened 5 years ago
0
Make CWL types constants for tab-completion

#111 jvdzwaan opened 5 years ago
0
Possible to add inputs of type array or record?

#110 allanbolipata closed 5 years ago
2
Validate workflows created in tests

#109 jvdzwaan closed 5 years ago
0
Update cwltool

#108 jvdzwaan closed 5 years ago
0
Add MultipleInputFeatureRequirement

#105 jvdzwaan closed 5 years ago
0
Question about using scriptcwl

#104 ghost closed 5 years ago
2
scatter_method is optional when scattering over a single parameter

#103 jvdzwaan closed 5 years ago
0
parse commandline flags/options when validating workflow

#102 SpheMakh opened 6 years ago
2
Have a list of step outputs as an input

#101 SpheMakh closed 6 years ago
0
filenames with underscores raise a ValueError exception

#100 SpheMakh closed 6 years ago
0
Add workflow input with CommandInputEnumSchema

#99 jvdzwaan opened 6 years ago
1
Pass on EnvVarRequirement

#98 jvdzwaan closed 6 years ago
1
Add motivation/design principles to documentation

#97 jvdzwaan opened 6 years ago
0
Warn when adding a workflow input with the same name as a previously added workflow input

#96 jvdzwaan closed 6 years ago
1
step with multiple outputs

#95 KerstenBreuer closed 6 years ago
2
First load tools, then workflows to prevent warnings

#94 jvdzwaan opened 6 years ago
1
Default value for boolean is incorrect

#93 jvdzwaan closed 6 years ago
1
Remove inline saving of workflows

#92 jvdzwaan closed 5 years ago
1
Optionally add prefix when loading steps from directory

#91 jvdzwaan opened 6 years ago
0
Add documentation about running cwltool from jupyter notebooks

#90 jvdzwaan opened 6 years ago
1
Add wf.run()

#89 jvdzwaan opened 6 years ago
0
Expose to_dot() from cwltool to vizualize workflow in jupyter notebooks

#88 jvdzwaan opened 6 years ago
0
Improve save interface

#87 jvdzwaan closed 5 years ago
0
Add option to return cwl string instead of writing it to file directly

#86 jvdzwaan closed 5 years ago
0
Adding a (sub)workflow twice leads to name clashes when saving inline

#85 jvdzwaan closed 6 years ago
2
Recursive inline saving

#84 jvdzwaan closed 6 years ago
4
Saving workflow with inline steps fails when shebang is missing from stepfile

#83 jvdzwaan closed 6 years ago
1
Duplicate ids when saving steps inline

#82 jvdzwaan closed 6 years ago
0
Add wf.set_documentation() to documentation

#81 jvdzwaan closed 6 years ago
0
Add more examples of workflows created with scriptcwl

#80 jvdzwaan opened 6 years ago
1
add add_inputs() function back as a deprecated function for backwards…

#79 rvanharen closed 6 years ago
0
Fixes for pytests under windows

#78 bldevries-escience closed 6 years ago
0
add method add_inputs to workflow generator

#77 jvdzwaan closed 6 years ago
0
Ben fix pytest for windows

#76 bldevries-escience closed 6 years ago
0
doc update

#75 rvanharen closed 6 years ago
0
Fixing pytest and paths for windows

#74 bldevries-escience closed 6 years ago
0
Ignore example files in codacy

#73 jvdzwaan closed 6 years ago
0
Add input reference as str, rather than as Reference

#72 LourensVeen closed 6 years ago
0
add_multiply_example.cwl contains local paths

#71 rvanharen closed 6 years ago
0
code styling

#70 rvanharen closed 6 years ago
0
Remove embedded shebang line and add test for inline save

#69 LourensVeen closed 6 years ago
0