SARAMIS: Simulation Assets for Robotic-Assisted and Minimally Invasive Surgery

.. image:: /docs/static/main_fig.png Author: Nina Montana Brown

SARAMIS is developed at the Wellcome EPSRC Centre for Interventional and Surgical Sciences, part of University College London (UCL).

Downloading the Data

SARAMIS data may be downloaded at the following links:

• https://huggingface.co/datasets/NMontanaBrown/saramis_abdomen/tree/main
• https://huggingface.co/datasets/NMontanaBrown/saramis_amos/tree/main
• https://huggingface.co/datasets/NMontanaBrown/saramis_total/tree/main
• https://huggingface.co/datasets/NMontanaBrown/saramis_metadata/tree/main
• https://huggingface.co/datasets/NMontanaBrown/saramis_rl_expt/tree/main

Installing

Using SARAMIS and it's functionalities will require the compilation of some libraries locally, installation of open-source software, or the use of a Docker image. For more information, see the Install_ folder.

You can pip install the code from the repository as follows:

::

pip install git+https://github.com/NMontanaBrown/saramis

Usage Of SARAMIS

• Labelling: full instructions to run the labelling, meshing, tetrahedralisation, and texturing of the SARAMIS dataset are included at the Labelling portion of the docs.

• RL Experiment: full instructions to run the training of a navigation agent are included in the RL experiment section of the docs.

Developing

Cloning ^^^^^^^

You can clone the repository using the following command:

::

git clone https://github.com/NMontanaBrown/saramis

Contributing ^^^^^^^^^^^^

Please see the contributing guidelines_.

Licensing and copyright

Copyright 2023 University College London. SARAMIS code is released under the BSD-3 license. Please see the license file_ for details. SARAMIS data is released under CC-BY-NC-SA license. Please see the paper and Supplementary Materials for full details.

Acknowledgements

Supported by Wellcome and EPSRC.

.. Wellcome EPSRC Centre for Interventional and Surgical Sciences: http://www.ucl.ac.uk/weiss .. source code repository: https://github.com/NMontanaBrown/saramis .. RL Experiment: https://github.com/NMontanaBrown/saramis/blob/main/docs/RL/README.md .. Labelling: https://github.com/NMontanaBrown/saramis/blob/main/docs/labelling/README.md .. Install: https://github.com/NMontanaBrown/saramis/blob/main/docs/install/SARAMIS.md .. University College London (UCL): http://www.ucl.ac.uk/ .. Wellcome: https://wellcome.ac.uk/ .. EPSRC: https://www.epsrc.ac.uk/ .. contributing guidelines: https://github.com/NMontanaBrown/saramis/blob/master/CONTRIBUTING.rst .. license file: https://github.com/NMontanaBrown/saramis/blob/master/LICENSE