Only target groups are passed from DSPDA to R environment, not the reactome groups. For WTA studies this limits groups available. Work around for now is to create custom group.
I will try to push reactome group info to the target annotations / fData in the DSPDA R environment in future release: User Story 147606: Pass reactome groups to targetAnnotations
Ultimate goal is to label volcano plots within DSPDA though.
Only target groups are passed from DSPDA to R environment, not the reactome groups. For WTA studies this limits groups available. Work around for now is to create custom group.
I will try to push reactome group info to the target annotations / fData in the DSPDA R environment in future release: User Story 147606: Pass reactome groups to targetAnnotations Ultimate goal is to label volcano plots within DSPDA though.