In a recent step-through, I noticed that in some instances RStudio is not finding inherited methods for GeoMxSet objects. This was related to the users setup and outdated GeomxTools installation conflicting with the revised version. We may want to consider adding checks for version in the workflow and to change the install to bioc install instead to ensure package versions match. Should also add instructions for detaching the old versions if we want to be explicit.
In a recent step-through, I noticed that in some instances RStudio is not finding inherited methods for GeoMxSet objects. This was related to the users setup and outdated GeomxTools installation conflicting with the revised version. We may want to consider adding checks for version in the workflow and to change the install to bioc install instead to ensure package versions match. Should also add instructions for detaching the old versions if we want to be explicit.