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NationalGenomicsInfrastructure
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TACA
Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm
MIT License
14
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16
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Stage data for delivery
#447
ssjunnebo
opened
12 hours ago
1
Add ONT FCs to bioinfo tab
#446
aanil
opened
1 day ago
1
Catch exception in case lane is numeric as is the case with older flowcells
#445
aanil
closed
3 days ago
1
Organising flowcell data on Miarka
#444
ssjunnebo
closed
17 hours ago
1
Add automated cleanup to ONT instrument transfer script
#443
kedhammar
closed
11 hours ago
1
Add support for backing up Aviti runs to PDC
#442
ssjunnebo
closed
3 days ago
4
Add Aviti FCs to bioinfo tab
#441
aanil
closed
2 weeks ago
3
Fix extra postfix in sample names for BCL Convert
#440
chuan-wang
closed
3 weeks ago
1
Fix missing settings for BCL Convert
#439
chuan-wang
closed
4 weeks ago
1
Fix issue that index 2 is automatically converted to RC by BCL Convert
#438
chuan-wang
closed
1 month ago
1
Fix for Tiny bug in reading the transfer log
#437
alneberg
closed
1 month ago
1
Fix TACA for handling 10X UMI cases by BCL Convert
#436
chuan-wang
closed
1 month ago
1
Switch to tarball and skip compression
#435
chuan-wang
closed
1 month ago
4
Update taca-ngi-pipeline repo url
#434
aanil
closed
1 month ago
1
For re-demux: keep PDC archive date if exists
#433
chuan-wang
closed
1 month ago
1
Initial setup for element aviti
#432
ssjunnebo
closed
1 month ago
6
update anglerfish command used
#431
kedhammar
closed
2 months ago
1
Add section header in samplesheet for run folder transfer
#430
chuan-wang
closed
4 months ago
1
Improve ci
#429
kedhammar
closed
5 months ago
1
Fix mypy inclusivity
#428
kedhammar
closed
5 months ago
0
Update server status to reflect ngi-preproc
#427
aanil
closed
6 months ago
0
Reduce redundant specificity for anglerfish samplesheet pattern
#426
kedhammar
closed
5 months ago
1
Fix erroneous name of pod5 output dir for ONT runs
#425
kedhammar
closed
6 months ago
0
Broaden ONT transfer script's categorization of QC runs
#424
kedhammar
closed
6 months ago
0
Refine versionlog check and bump versionlog
#423
kedhammar
closed
7 months ago
0
Change db names
#422
alneberg
closed
7 months ago
1
Increase test coverage
#421
kedhammar
closed
7 months ago
0
Fix cases that MiSeq samplesheet misses index or index2
#420
chuan-wang
closed
8 months ago
3
Fix and improve TACA for handling QC runs
#419
kedhammar
closed
8 months ago
2
Bump test coverage to 20%
#418
kedhammar
closed
8 months ago
1
Experiment w. CodeCov
#417
kedhammar
closed
9 months ago
2
Implement CodeCoverage
#416
kedhammar
closed
9 months ago
2
Try integrating CodeCov in GHA
#415
kedhammar
closed
9 months ago
0
Fix bug with isinstance clause
#414
chuan-wang
closed
9 months ago
0
Implement CI testing and increase testing coverage
#413
kedhammar
closed
9 months ago
1
Fix bugs that changs in PR #404 were reverted in PR #411
#412
chuan-wang
closed
10 months ago
1
Introduce CI to repo
#411
kedhammar
closed
10 months ago
0
More improvements on TACA running Anglerfish
#410
kedhammar
closed
9 months ago
0
Update how Anglerfish is applied
#409
kedhammar
closed
10 months ago
2
Adapt to new ONT pod5 format
#408
kedhammar
closed
10 months ago
0
Adapt to new(?) STUPID json format
#407
kedhammar
closed
10 months ago
0
Remove unused travis building and badge
#406
aanil
closed
10 months ago
0
Merge Run and Standard Run base classes to a single base class
#405
aanil
opened
10 months ago
0
Fix typo
#404
chuan-wang
closed
10 months ago
0
Initial PR, tests for the ONT transfer script
#403
kedhammar
closed
10 months ago
0
Hotfix of bugs
#402
chuan-wang
closed
10 months ago
1
Ignore runs in 3rd PromethION column
#401
kedhammar
closed
11 months ago
0
Run Anglerfish v0.6.0 with --lenient and --ont_barcodes options
#400
kedhammar
closed
12 months ago
0
Version V1.0.0
#399
chuan-wang
closed
10 months ago
4
More bug fix for rsync permission issue
#398
chuan-wang
closed
1 year ago
0
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