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NationalGenomicsInfrastructure
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TACA
Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm
MIT License
14
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16
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enable taca to archive ONT runs
#395
FranBonath
closed
1 year ago
0
Fix bug with rsync permission issue
#394
chuan-wang
closed
1 year ago
0
Fix issues with starting Anglerfish
#393
kedhammar
closed
1 year ago
0
Remove redundant function cleanup_processing in cleanup.py
#392
aanil
closed
1 year ago
0
Support multiple project ID for run folder transfer
#391
chuan-wang
closed
1 year ago
0
Fix bug that NovaSeqXPlus date format cause error in writing pdc_archived timestamp
#390
chuan-wang
closed
1 year ago
0
Remove the temp change of creating links
#389
chuan-wang
closed
1 year ago
0
Minion renovation supplement
#388
kedhammar
closed
1 year ago
0
Fix bugs for encrypting and archiving runs on ngi-preproc
#387
chuan-wang
closed
1 year ago
0
MinION renovation
#386
kedhammar
closed
1 year ago
2
Write archived file names to log
#385
aanil
closed
1 year ago
0
Fix bugs for encrypting and archiving runs on ngi-preproc
#381
chuan-wang
closed
1 year ago
0
Adapt MinKNOW .json trimming to new format from Dorado update
#380
kedhammar
closed
1 year ago
0
Allow database update of finished ONT runs
#379
kedhammar
closed
1 year ago
0
Add pandas to requirements
#378
kedhammar
closed
1 year ago
0
Set up copying of ONT metadata, calc new metrics and improve modularization
#377
kedhammar
closed
1 year ago
0
Reset to last PR
#376
kedhammar
closed
1 year ago
0
Update path to store Anglerfish results
#375
ssjunnebo
closed
1 year ago
0
pmub (backwards bump)
#374
kedhammar
closed
1 year ago
0
Implement logging for PromethION script
#373
kedhammar
closed
1 year ago
1
Refactor handling of MinION QC runs
#372
ssjunnebo
closed
1 year ago
1
Expand PromethION QC log query
#371
kedhammar
closed
1 year ago
0
Refactor archiving for moving to ngi-nas
#370
aanil
closed
1 year ago
0
Enable TACA to retrieve error and warnings in demux logs
#369
chuan-wang
closed
1 year ago
3
Clean up PromethION archiving and turn rsync into an update
#368
kedhammar
closed
1 year ago
0
Automate collection of ONT QC metrics
#367
kedhammar
closed
1 year ago
2
Improve dir search of promethion transfer script
#366
kedhammar
closed
1 year ago
1
Make file transfer faster for PromethION
#365
ssjunnebo
closed
1 year ago
3
Faster file transfer for PromethION data
#364
ssjunnebo
closed
1 year ago
0
Add functionality to only update DB for a specified run
#363
kedhammar
closed
1 year ago
0
Trim MinKNOW .json reports to save space
#362
kedhammar
closed
1 year ago
0
NovaSeqXPlus integration
#361
ssjunnebo
closed
1 year ago
0
Possible to check disk usage for a mounted virtual NAS + devcontainer and docker
#360
alneberg
closed
1 year ago
0
Fix minknow reports finalfinalfinal
#359
kedhammar
closed
1 year ago
0
Quickfix to transfer reports of finished runs
#358
kedhammar
closed
1 year ago
1
Re-work transfer of MinKNOW .html reports to ngi-internal
#357
kedhammar
closed
1 year ago
1
Promethion dump path fix
#356
ssjunnebo
closed
1 year ago
0
Fix minknow reports
#355
kedhammar
closed
1 year ago
0
Change PromethION offload location
#354
ssjunnebo
closed
1 year ago
0
Promethion rsync fix
#353
ssjunnebo
closed
1 year ago
0
Move MinKNOW reports to ngi-internal instead of embedding in StatusDB doc
#352
kedhammar
closed
1 year ago
2
Handle demux case that ordered read length is different from seq setup
#351
chuan-wang
closed
1 year ago
2
Nanopore to couch
#350
kedhammar
closed
1 year ago
0
Add functionality for monitoring PromethION status
#349
ssjunnebo
closed
1 year ago
0
Bugfix
#348
kedhammar
closed
1 year ago
0
Squiggle fixes
#347
ssjunnebo
closed
1 year ago
0
Automatically create / update statusdb entries for ONT runs
#346
kedhammar
closed
1 year ago
1
Print path to file
#345
ssjunnebo
closed
1 year ago
0
Refactor ONT transfer from ngi-nas
#344
ssjunnebo
closed
2 years ago
0
Handle transfer details better for ONT data
#343
ssjunnebo
closed
2 years ago
0
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