NelleV moanin issues - Githubissues

NelleV / moanin

Timecourse transcriptomic analysis

https://nellev.github.io/moanin/

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Need to support bioconductor class

#49 epurdom closed 4 years ago
3
Eap/documentation fixes

#48 epurdom closed 4 years ago
0
Does package actually use edge anymore

#47 epurdom closed 4 years ago
1
Removing data from package + adding dependency to timecoursedata

#46 NelleV closed 4 years ago
0
FIX adding bioccheck as extra dependency

#45 NelleV closed 4 years ago
0
Make moanin_model an S4 object.

#44 NelleV closed 4 years ago
0
ENH make rescale_values public for paper

#43 NelleV closed 4 years ago
0
Getting the package ready for bioconductor.

#42 NelleV closed 4 years ago
0
The data is too large for bioconductor

#41 NelleV closed 4 years ago
0
FIX clarify return variable in splines_kmeans_score_and_label

#40 NelleV closed 4 years ago
0
FIX create_meta_prediction now works without the formula

#39 NelleV closed 4 years ago
0
FIX fit_predict_splines is now private

#38 NelleV closed 4 years ago
0
FIX undefined variable in scoring & labeling

#37 NelleV closed 4 years ago
0
add a print function for moanin_model

#36 epurdom closed 4 years ago
0
Eap/documentation fixes

#35 epurdom closed 4 years ago
0
Should fit_predict_splines be an internal function?

#34 epurdom closed 4 years ago
0
fixes based on package checks

#33 epurdom closed 4 years ago
0
plot_model_explorer legend

#32 epurdom closed 4 years ago
1
Provide filtering cutoff of splines_kmeans_score_and_label

#31 epurdom closed 4 years ago
0
Need a print function for moanin object

#30 epurdom closed 4 years ago
1
Undefined variable in splines_kmeans_score_and_label

#29 epurdom closed 4 years ago
1
Degrees of freedom in create_splines_model if user gives formula/basis

#28 epurdom closed 4 years ago
3
Need to add @return values for help files

#27 epurdom closed 4 years ago
0
Vignettes

#26 epurdom closed 4 years ago
1
Better website + documentation

#25 NelleV closed 4 years ago
0
ENH returning max_score for scores_and_labels

#24 NelleV closed 4 years ago
0
TST adding unit tests for scoring & labeling

#23 NelleV closed 4 years ago
0
Deploy documentation automatically.

#22 NelleV closed 4 years ago
0
ENH Adding max_score option to score_and_label

#21 NelleV closed 4 years ago
0
Bunch of changes after testing on EPICON data

#20 NelleV closed 5 years ago
0
ENH DE_timecourse now outputs pval and qval

#19 NelleV closed 5 years ago
0
ENH Making moanin_model a class

#18 NelleV closed 5 years ago
0
DOC whitespace

#17 NelleV closed 5 years ago
0
MAINT removing unused elements + building docs

#16 NelleV closed 5 years ago
0
Create several docker container with several versions of R

#15 NelleV closed 4 years ago
0
MAINT DOC activating travis to build & push docs automatically

#14 NelleV closed 5 years ago
0
FIX better separator in the pval, qval, lfc table returned in timepoi…

#13 NelleV closed 5 years ago
0
Renaming create_splines_model to create_moanin_model to be more general

#12 NelleV closed 5 years ago
0
ENH + FIX is_contrasts is used everywhere?

#11 NelleV closed 5 years ago
0
ENH Contrasts can now be provided as either limma contrasts or vector…

#10 NelleV closed 5 years ago
0
Have all DE method take either string contrasts or limma contrasts.

#9 NelleV closed 5 years ago
0
ENH Can now subset data before plotting

#8 NelleV closed 5 years ago
0
Make the API cleaner

#7 NelleV closed 4 years ago
0
Renaming function plot_centroids/plot_genes

#6 NelleV closed 5 years ago
0
DE_timecourse fails if the data is provided without row.names

#5 NelleV opened 5 years ago
0
Add legend to plot_centroids

#4 epurdom closed 5 years ago
0
Adding documentation

#3 NelleV closed 5 years ago
0
Adding more information in README

#2 NelleV closed 5 years ago
0
FIX disabling publishing after travis success

#1 NelleV closed 5 years ago
0