Pulling Main / Rebase often freezes window

[bagnaram]

Description

Git operation intermittent freezing nvim status windows

Neovim version

[bagnaram@fedora]~% nvim --version NVIM v0.10.1 Build type: RelWithDebInfo LuaJIT 2.1.1720049189

Operating system and version

Linux fedora 6.10.3-200.fc40.x86_64

Steps to reproduce

1. Working on a branch switch to main branch
2. pull latest from main
3. switch back to the working branch & attempt to rebase onto main

Expected behavior

The rebase windows and popups should save and close properly after the git operation completes

Actual behavior

Often vim will freeze and the git status buffer will remain open after a git operation. Error logs:

nvim_del_augroup_by_id'                                                                      
        ...ram/.config/nvim/bundle/neogit/lua/neogit/lib/buffer.lua:666: in function <...ram/.config/nvim/bundle/neogit
/lua/neogit/lib/buffer.lua:664>                                                                                        
Error executing lua callback: ...ram/.config/nvim/bundle/neogit/lua/neogit/lib/buffer.lua:666: Vim:E367: No such group:
 "--Deleted--"                                                                                                         
stack traceback:                                                                                                       
        [C]: in function 'nvim_del_augroup_by_id'                                                                      
        ...ram/.config/nvim/bundle/neogit/lua/neogit/lib/buffer.lua:666: in function <...ram/.config/nvim/bundle/neogit
/lua/neogit/lib/buffer.lua:664>                                                                                        
Error executing lua callback: ...ram/.config/nvim/bundle/neogit/lua/neogit/lib/buffer.lua:666: Vim:E367: No such group:
 "--Deleted--"                                                                                                         

Minimal config

-- NOTE: See the end of this file if you are reporting an issue, etc. Ignore all the "scary" functions up top, those are
-- used for setup and other operations.
local M = {}

local base_root_path = vim.fn.fnamemodify(debug.getinfo(1, "S").source:sub(2), ":p:h") .. "/.min"
function M.root(path)
  return base_root_path .. "/" .. (path or "")
end

function M.load_plugin(plugin_name, plugin_url)
  local package_root = M.root("plugins/")
  local install_destination = package_root .. plugin_name
  vim.opt.runtimepath:append(install_destination)

  if not vim.loop.fs_stat(package_root) then
    vim.fn.mkdir(package_root, "p")
  end

  if not vim.loop.fs_stat(install_destination) then
    print(string.format("> Downloading plugin '%s' to '%s'", plugin_name, install_destination))
    vim.fn.system({
      "git",
      "clone",
      "--depth=1",
      plugin_url,
      install_destination,
    })
    if vim.v.shell_error > 0 then
      error(string.format("> Failed to clone plugin: '%s' in '%s'!", plugin_name, install_destination),
        vim.log.levels.ERROR)
    end
  end
end

---@alias PluginName string The plugin name, will be used as part of the git clone destination
---@alias PluginUrl string The git url at which a plugin is located, can be a path. See https://git-scm.com/book/en/v2/Git-on-the-Server-The-Protocols for details
---@alias MinPlugins table<PluginName, PluginUrl>

---Do the initial setup. Downloads plugins, ensures the minimal init does not pollute the filesystem by keeping
---everything self contained to the CWD of the minimal init file. Run prior to running tests, reproducing issues, etc.
---@param plugins? table<PluginName, PluginUrl>
function M.setup(plugins)
  vim.opt.packpath = {}                      -- Empty the package path so we use only the plugins specified
  vim.opt.runtimepath:append(M.root(".min")) -- Ensure the runtime detects the root min dir

  -- Install required plugins
  if plugins ~= nil then
    for plugin_name, plugin_url in pairs(plugins) do
      M.load_plugin(plugin_name, plugin_url)
    end
  end

  vim.env.XDG_CONFIG_HOME = M.root("xdg/config")
  vim.env.XDG_DATA_HOME = M.root("xdg/data")
  vim.env.XDG_STATE_HOME = M.root("xdg/state")
  vim.env.XDG_CACHE_HOME = M.root("xdg/cache")

  -- NOTE: Cleanup the xdg cache on exit so new runs of the minimal init doesn't share any previous state, e.g. shada
  vim.api.nvim_create_autocmd("VimLeave", {
    callback = function()
      vim.fn.system({
        "rm",
        "-r",
        "-f",
        M.root("xdg")
      })
    end
  })
end

-- NOTE: If you have additional plugins you need to install to reproduce your issue, include them in the plugins
-- table within the setup call below.
M.setup({
  plenary = "https://github.com/nvim-lua/plenary.nvim.git",
  telescope = "https://github.com/nvim-telescope/telescope.nvim",
  diffview = "https://github.com/sindrets/diffview.nvim",
  neogit = "https://github.com/NeogitOrg/neogit"
})
-- WARN: Do all plugin setup, test runs, reproductions, etc. AFTER calling setup with a list of plugins!
-- Basically, do all that stuff AFTER this line.
require("neogit").setup({}) -- For instance, setup Neogit

local neogit = require('neogit')

neogit.setup {
  -- Hides the hints at the top of the status buffer
  disable_hint = false,
  -- Disables changing the buffer highlights based on where the cursor is.
  disable_context_highlighting = true,
  -- Disables signs for sections/items/hunks
  disable_signs = false,
  -- Do not ask to confirm the commit - just do it when the buffer is closed.
  disable_commit_confirmation = false,
  -- Uses `vim.notify` instead of the built-in notification system.
  disable_builtin_notifications = false,
  -- Changes what mode the Commit Editor starts in. `true` will leave nvim in normal mode, `false` will change nvim to insert mode, and `"auto"` will change nvim to insert mode IF the commit message is empty, otherwise leaving it in normal mode.
  -- When enabled, will watch the `.git/` directory for changes and refresh the status buffer in response to filesystem
  -- events.
  disable_insert_on_commit = true,
    filewatcher = {
    interval = 1000,
    enabled = true,
  },
  -- Used to generate URL's for branch popup action "pull request".
  git_services = {
    ["github.com"] = "https://github.com/${owner}/${repository}/compare/${branch_name}?expand=1",
    ["bitbucket.org"] = "https://bitbucket.org/${owner}/${repository}/pull-requests/new?source=${branch_name}&t=1",
    ["gitlab.com"] = "https://gitlab.com/${owner}/${repository}/merge_requests/new?merge_request[source_branch]=${branch_name}",
  },
  -- Allows a different telescope sorter. Defaults to 'fuzzy_with_index_bias'. The example below will use the native fzf
  -- sorter instead. By default, this function returns `nil`.
  telescope_sorter = function()
    return require("telescope").extensions.fzf.native_fzf_sorter()
  end,
  -- Persist the values of switches/options within and across sessions
  remember_settings = true,
  -- Scope persisted settings on a per-project basis
  use_per_project_settings = true,
  -- Table of settings to never persist. Uses format "Filetype--cli-value"
  ignored_settings = {
    "NeogitPushPopup--force-with-lease",
    "NeogitPushPopup--force",
    "NeogitPullPopup--rebase",
    "NeogitCommitPopup--allow-empty",
    "NeogitRevertPopup--no-edit",
  },
  -- Neogit refreshes its internal state after specific events, which can be expensive depending on the repository size.
  -- Disabling `auto_refresh` will make it so you have to manually refresh the status after you open it.
  auto_refresh = true,
  -- Value used for `--sort` option for `git branch` command
  -- By default, branches will be sorted by commit date descending
  -- Flag description: https://git-scm.com/docs/git-branch#Documentation/git-branch.txt---sortltkeygt
  -- Sorting keys: https://git-scm.com/docs/git-for-each-ref#_options
  sort_branches = "-committerdate",
  -- Change the default way of opening neogit
  kind = "tab",
  -- The time after which an output console is shown for slow running commands
  console_timeout = 2000,
  -- Automatically show console if a command takes more than console_timeout milliseconds
  auto_show_console = true,
  status = {
    recent_commit_count = 10,
    recent_commit_include_author_info = true,
  },
  commit_editor = {
    kind = "split",
  },
  commit_select_view = {
    kind = "tab",
  },
  commit_view = {
    kind = "vsplit",
  },
  log_view = {
    kind = "tab",
  },
  rebase_editor = {
    kind = "split",
  },
  reflog_view = {
    kind = "tab",
  },
  merge_editor = {
    kind = "split",
  },
  preview_buffer = {
    kind = "split",
  },
  popup = {
    kind = "split",
  },
  signs = {
    -- { CLOSED, OPENED }
    hunk = { "", "" },
    item = { "", "" },
    section = { "", "" },
  },
  -- Each Integration is auto-detected through plugin presence, however, it can be disabled by setting to `false`
  integrations = {
    -- If enabled, use telescope for menu selection rather than vim.ui.select.
    -- Allows multi-select and some things that vim.ui.select doesn't.
    telescope = nil,
    -- Neogit only provides inline diffs. If you want a more traditional way to look at diffs, you can use `diffview`.
    -- The diffview integration enables the diff popup.
    --
    -- Requires you to have `sindrets/diffview.nvim` installed.
    diffview = nil,
  },
  sections = {
    -- Reverting/Cherry Picking
    sequencer = {
      folded = false,
      hidden = false,
    },
    untracked = {
      folded = false,
      hidden = false,
    },
    unstaged = {
      folded = false,
      hidden = false,
    },
    staged = {
      folded = false,
      hidden = false,
    },
    stashes = {
      folded = true,
      hidden = false,
    },
    unpulled_upstream = {
      folded = true,
      hidden = false,
    },
    unmerged_upstream = {
      folded = false,
      hidden = false,
    },
    unpulled_pushRemote = {
      folded = true,
      hidden = false,
    },
    unmerged_pushRemote = {
      folded = false,
      hidden = false,
    },
    recent = {
      folded = true,
      hidden = false,
    },
    rebase = {
      folded = true,
      hidden = false,
    },
  },
  mappings = {
    finder = {
      ["<cr>"] = "Select",
      ["<c-c>"] = "Close",
      ["<esc>"] = "Close",
      ["<c-n>"] = "Next",
      ["<c-p>"] = "Previous",
      ["<down>"] = "Next",
      ["<up>"] = "Previous",
      ["<tab>"] = "MultiselectToggleNext",
      ["<s-tab>"] = "MultiselectTogglePrevious",
      ["<c-j>"] = "NOP",
    },
    popup = {
      ["?"] = "HelpPopup",
      ["A"] = "CherryPickPopup",
      ["D"] = "DiffPopup",
      ["M"] = "RemotePopup",
      ["p"] = "PushPopup",
      ["X"] = "ResetPopup",
      ["Z"] = "StashPopup",
      ["b"] = "BranchPopup",
      ["c"] = "CommitPopup",
      ["f"] = "FetchPopup",
      ["l"] = "LogPopup",
      ["m"] = "MergePopup",
      ["F"] = "PullPopup",
      ["r"] = "RebasePopup",
      ["v"] = "RevertPopup",
    },
    status = {
      ["q"] = "Close",
      ["I"] = "InitRepo",
      ["1"] = "Depth1",
      ["2"] = "Depth2",
      ["3"] = "Depth3",
      ["4"] = "Depth4",
      ["<tab>"] = "Toggle",
      ["x"] = "Discard",
      ["s"] = "Stage",
      ["S"] = "StageUnstaged",
      ["<c-s>"] = "StageAll",
      ["u"] = "Unstage",
      ["U"] = "UnstageStaged",
      ["d"] = "DiffAtFile",
      ["$"] = "CommandHistory",
      ["#"] = "Console",
      ["<c-r>"] = "RefreshBuffer",
      ["<enter>"] = "GoToFile",
      ["<c-v>"] = "VSplitOpen",
      ["<c-x>"] = "SplitOpen",
      ["<c-t>"] = "TabOpen",
      ["{"] = "GoToPreviousHunkHeader",
      ["}"] = "GoToNextHunkHeader",
    },
  },
}

[bagnaram]

It might have to do with my pinentry method. I created a wrapper gpg script

#!/bin/sh

set -- --pinentry-mode loopback "$@"
exec /usr/bin/gpg "$@"

that gets called when inside of a git session and that seems to work. However it still sometimes wigs out when there is no card found. The git command hangs indefinitely inside of neovim