search

Nesvilab / IonQuant

A label free quantification tool.
Other
15 stars 8 forks source link

IonQuant with iProphet results? #14

Closed oliverschilling closed 3 years ago

oliverschilling commented 3 years ago

Dear IonQuant team,

is it possible to use IonQuant with output from iProphet (rather than MSFragger)?

Thanks

Oliver

fcyu commented 3 years ago

Hi Oliver,

If it is a pep.xml format, IonQuant might support it. But it will not be able to update Philosopher's tables if there are no such tables.

Best,

Fengchao

anesvi commented 3 years ago

Are you trying to run with another search engine? There could be differences in pep.xml too. We have never tried it with something other than MSFragger.

From: Fengchao notifications@github.com Sent: Wednesday, February 24, 2021 11:58 AM To: Nesvilab/IonQuant IonQuant@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: Re: [Nesvilab/IonQuant] IonQuant with iProphet results? (#14)

External Email - Use Caution

Hi Oliver,

If it is a pep.xml format, IonQuant might support it. But it will not be able to update Philosopher's tables if there are no such tables.

Best,

Fengchao

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://github.com/Nesvilab/IonQuant/issues/14#issuecomment-785220826, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AIIMM64TDA3GXW6U5BTZARDTAUVYHANCNFSM4YE3WF6Q.

Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues

oliverschilling commented 3 years ago

Dear Alexi and Fengchao

yes, it will be a pep.xml format. We are integrating different search engines via iProphet. It works very, very nicely. We would happily try IonQuant on that output (ideally under your guidance...) and would happily contribute to integrating the two.

Thanks for the fast response!

Best wishes

Oliver

anesvi commented 3 years ago

Good. Perhaps contact me or Fengchao directly – will be easier that way

From: oliverschilling notifications@github.com Sent: Wednesday, February 24, 2021 4:29 PM To: Nesvilab/IonQuant IonQuant@noreply.github.com Cc: Nesvizhskii, Alexey nesvi@med.umich.edu; Comment comment@noreply.github.com Subject: Re: [Nesvilab/IonQuant] IonQuant with iProphet results? (#14)

External Email - Use Caution

Dear Alexi and Fengchao

yes, it will be a pep.xml format. We are integrating different search engines via iProphet. It works very, very nicely. We would happily try IonQuant on that output (ideally under your guidance...) and would happily contribute to integrating the two.

Thanks for the fast response!

Best wishes

Oliver

— You are receiving this because you commented. Reply to this email directly, view it on GitHubhttps://github.com/Nesvilab/IonQuant/issues/14#issuecomment-785396488, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AIIMM66GU5E2ENBPDHQRLELTAVVRLANCNFSM4YE3WF6Q.

Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues