Closed oliverschilling closed 3 years ago
Hi Oliver,
If it is a pep.xml format, IonQuant might support it. But it will not be able to update Philosopher's tables if there are no such tables.
Best,
Fengchao
Are you trying to run with another search engine? There could be differences in pep.xml too. We have never tried it with something other than MSFragger.
From: Fengchao notifications@github.com Sent: Wednesday, February 24, 2021 11:58 AM To: Nesvilab/IonQuant IonQuant@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: Re: [Nesvilab/IonQuant] IonQuant with iProphet results? (#14)
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Hi Oliver,
If it is a pep.xml format, IonQuant might support it. But it will not be able to update Philosopher's tables if there are no such tables.
Best,
Fengchao
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Dear Alexi and Fengchao
yes, it will be a pep.xml format. We are integrating different search engines via iProphet. It works very, very nicely. We would happily try IonQuant on that output (ideally under your guidance...) and would happily contribute to integrating the two.
Thanks for the fast response!
Best wishes
Oliver
Good. Perhaps contact me or Fengchao directly – will be easier that way
From: oliverschilling notifications@github.com Sent: Wednesday, February 24, 2021 4:29 PM To: Nesvilab/IonQuant IonQuant@noreply.github.com Cc: Nesvizhskii, Alexey nesvi@med.umich.edu; Comment comment@noreply.github.com Subject: Re: [Nesvilab/IonQuant] IonQuant with iProphet results? (#14)
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Dear Alexi and Fengchao
yes, it will be a pep.xml format. We are integrating different search engines via iProphet. It works very, very nicely. We would happily try IonQuant on that output (ideally under your guidance...) and would happily contribute to integrating the two.
Thanks for the fast response!
Best wishes
Oliver
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Dear IonQuant team,
is it possible to use IonQuant with output from iProphet (rather than MSFragger)?
Thanks
Oliver