How to annotate spectra to experiment and replicate?

Nesvilab / IonQuant

A label free quantification tool.

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How to annotate spectra to experiment and replicate? #20

Closed comcon1 closed 3 years ago

comcon1 commented 3 years ago

Dear developers!

Thank you very much for your software. Could you please explain how to associate spectrum with experiment and replicate. Is it affects MBR procedure or I can simply annotate them in MSstats file after run.

Thank you.

fcyu commented 3 years ago

It won't affect MBR. But it affects peptide to protein rolling: there is only one intensity for a protein in a exp_replicate combination/folder.

Best,

Fengchao