search

Nesvilab / IonQuant

A label free quantification tool.
Other
15 stars 8 forks source link

Input file requirements #47

Closed patrick-willems closed 10 months ago

patrick-willems commented 10 months ago

Best,

We are exploring to use IonQuant for quantification after merging search results from multiple search engines. What would be the minimum required fields from the psm.tsv to get IonQuant correctly running - or is it not possible to bypass Philosopher processing?

Thanks in advance, Patrick

anesvi commented 10 months ago

Dear Patrick We have no plans currently to support in IonQuant output from tools other than MSFragger. So you can try to make a PSM.tsv like format, but we cannot guarantee that things will not get broken soon as the tools are still changing, and the input/output file formats are changing. Best Alexey

Get Outlook for iOShttps://aka.ms/o0ukef

From: patrick-willems @.> Sent: Wednesday, October 25, 2023 5:01:51 AM To: Nesvilab/IonQuant @.> Cc: Subscribed @.***> Subject: [Nesvilab/IonQuant] Input file requirements (Issue #47)

External Email - Use Caution

Best,

We are exploring to use IonQuant for quantification after merging search results from multiple search engines. What would be the minimum required fields from the psm.tsv to get IonQuant correctly running - or is it not possible to bypass Philosopher processing?

Thanks in advance, Patrick

— Reply to this email directly, view it on GitHubhttps://github.com/Nesvilab/IonQuant/issues/47, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AIIMM6ZBWZN7GNWOZNECTOTYBDIP7AVCNFSM6AAAAAA6PAGPE2VHI2DSMVQWIX3LMV43ASLTON2WKOZRHE3DAOJQGI3TGOA. You are receiving this because you are subscribed to this thread.Message ID: @.***>

Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues