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Nesvilab / IonQuant

A label free quantification tool.
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got an out-of-memory error when running IonQuant #54

Open huiyinc opened 2 months ago

huiyinc commented 2 months ago

Hi Fengchao,

I am working on proteomics data using FragPipe (with IonQuant) and processing a dataset of 1392 mzML files. The analysis proceeds smoothly until IonQuant runs into an out-of-memory error. My computer has 280 GB of memory, so I am unsure if increasing the memory is the solution. I would appreciate any suggestions you might have. I've attached the log file for your reference.

Thank you.

Huiyin log_2024-05-22_14-50-43.txt

fcyu commented 2 months ago

Hi Huiyin,

Thanks for the feedback. With 1392 files, it might a bit memory-consuming for IonQuant. I have reduced the memory footprint a little bit in the latest version. Could you send an email to yufeATumich.edu (replace AT with @) so that I can share the pre-released version to you?

Thanks,

Fengchao

huiyinc commented 2 months ago

Hi Fengchao,

Thanks for the prompt reply. I will send the email.

Best wishes,

Huiyin

Fengchao @.***> 於 2024年5月28日 下午9:09 寫道：  Hi Huiyin,

Thanks for the feedback. With 1392 files, it might a bit memory-consuming for IonQuant. I have reduced the memory footprint a little bit in the latest version. Could you send an email to yufeATumich.edu (replace AT with @) so that I can share the pre-released version to you?

Thanks,

Fengchao

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