search

Nesvilab / IonQuant

A label free quantification tool.
Other
16 stars 8 forks source link

Index out of bounds issue IonQuant #58

Closed dgeggerm closed 6 days ago

dgeggerm commented 2 months ago

Hi,

I am trying to analyze Orbitrap DDA and timsTOF DDA runs from the same set of samples together. My goal is to combine all the data and assign both the Orbitrap and timsTOF runs of the same sample to a single bioreplicate.

When I tested this approach with three samples, everything worked fine until I reached the ionquant step. At that point, I encountered an error when it tried to read the first sample again:

image

I’m unsure whether this is a technical issue or if what I’m trying to do simply isn’t possible. Could you provide some guidance?

fcyu commented 2 months ago

Combining Orbitrap and timsTOF is not a good idea and not supported because the data dimensionality and property is totally different.

Best,

Fengchao