Localizoom Ebrain viewer only

Neural-Systems-at-UIO / LocaliZoom

Localizoom viewer https://localizoom.readthedocs.io

MIT License

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Localizoom Ebrain viewer only #15

Closed Majpuc closed 2 years ago

Majpuc commented 3 years ago

In order to replace the urls of UiO version of Localizoom on the KG dataset cards, we need a new version which is only a viewer:

showing the image
filmstrip
atlas overlay. In that version there should be: -no annotation
no link to MeshView
no data download
no nonlinreg

Tevemadar commented 3 years ago

http://localizoom-localizoom.apps-dev.hbp.eu is updated now (actual example: http://localizoom-localizoom.apps-dev.hbp.eu/filmstripzoom.html?atlas=ABA_Mouse_CCFv3_2017_25um&series=Test/E15.json&pyramids=imgsvc-7e9a11b7-b27f-67d7-95c8-3b72bb5086e9)

Majpuc commented 2 years ago

Now that the correct lz json files have been copied to the curation containers (source) on CSCS, we need Localizoom Viewer to fetch that info and combine with DZI pyramids present in the buckets. The priority is on the young animals from Ingvild's dev project (juvenile, preadolescents and adolescents)

Majpuc commented 2 years ago

Finished on 18.10.2021