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Neural-Systems-at-UIO / LocaliZoom

Localizoom viewer https://localizoom.readthedocs.io
MIT License
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LocaliZoom links for datasets registered to Dev-atlases #17

Closed ingvildeb closed 2 years ago

ingvildeb commented 3 years ago

For the DOPAMAP project, we need Localizoom links displaying overlay from developmental atlases. We have used the QuickNII versions with developmental atlases, found at Z:\NESYS_Tools\QuickNII\DevMouse

We have actually only used two of the five atlases for this project. Example JSONs are located at Z:\HBP_Curation\QuickNII_projects\Projects\Incomplete_projects\2019_Dopamine_receptors_developing_mice\D1R\example_jsons

C76_anchoring_final (N3 block 7710) and C142_anchoring_final (N3 block 7908) are from different groups, but anchored to the P28 atlas (P28.bat) C213_anchoring_final (N3 block 7961) is anchored to the P14 atlas (P14.bat)

Full list of IDs and JSONs to be provided.

ingvildeb commented 3 years ago

Here is the full list of IDs with JSON location and N3 block ID:

https://docs.google.com/spreadsheets/d/1cptNn5WIWeIX08JW9H2Vo-1IeqPzqs-Qp6o0hnk4gHU/edit?usp=sharing

Let me know if anything else is needed.

Majpuc commented 3 years ago

Finalizing. Validation is ongoing

Majpuc commented 2 years ago

finished on October 18.2021