Neural-Systems-at-UIO / LocaliZoom

Localizoom viewer https://localizoom.readthedocs.io
MIT License
3 stars 1 forks source link

Display error for a tissue section image anchored with VisuAlign #36

Closed ingrre closed 1 year ago

ingrre commented 1 year ago

error for s33 in this image series in Localizoom: https://localizoom.apps.hbp.eu/filmstripzoom.html?atlas=WHS_SD_Rat_v4_39um&series=https://data-proxy.ebrains.eu/api/v1/public/buckets/img-ed1bc060-d046-4352-b0fa-f7164058136b/12906_PtP_PHAL_IR-WHSSDv4-nonlin-fix.json&pyramids=buckets/img-ed1bc060-d046-4352-b0fa-f7164058136b

It has been anchored with VisuAlign, and it looks OK there. See png and json in this folder: Z:\HBP-Voucher_Rat-corticome\SubProject2_PosterioParietalCortex\12906\PHAL\WHSSDv4

Majpuc commented 1 year ago

Both the original json and the non-lin fix json contain 24 markers and the markers have identical coordinates.

ingrre commented 1 year ago

Also found an error in this series (section # 181) https://localizoom.apps.hbp.eu/filmstripzoom.html?atlas=WHS_SD_Rat_v4_39um&series=https://data-proxy.ebrains.eu/api/v1/public/buckets/img-953254a7-c9d2-4ad2-8a18-b32c2860e08d/F20_BDA_IR-WHSSDv4-nonlin-fix.json&pyramids=buckets/img-953254a7-c9d2-4ad2-8a18-b32c2860e08d

The VisuAlign registration is here: Z:\HBP-Voucher_Rat-corticome\SubProject1_Orbitofrontal\F20\BDA\WHSSDv4

Tevemadar commented 1 year ago

Yes, it's a known issue for a month or so, just I haven't got to it yet.

Tevemadar commented 1 year ago

Done. 33, 181