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NeuroML
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NeuroML2
This repository hosts the NeuroML 2 Schema, the ComponentType definitions in LEMS and the core documentation of NeuroML2.
https://docs.neuroml.org
GNU Lesser General Public License v3.0
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Checking updates on documentation_updates...
#180
pgleeson
closed
2 years ago
0
Feat/xmllint xsds
#179
sanjayankur31
closed
2 years ago
1
[Question] Scoping rules in NML2
#178
thorstenhater
closed
2 years ago
4
Call for ideas: how should we implement model optimization/parameter exports in NeuroML model definitions?
#176
llandsmeer
opened
2 years ago
3
CI: java 16/17 support
#177
sanjayankur31
closed
2 years ago
7
[Question] Should "location" "gridlayout" etc. not extend base or basewithoutid?
#175
sanjayankur31
opened
2 years ago
1
Make a general plan for python and java release support
#174
sanjayankur31
opened
2 years ago
0
[Question] Schema Definition for ComponentType
#173
thorstenhater
opened
2 years ago
2
Feat/copy docs from xml
#172
sanjayankur31
closed
2 years ago
3
Remove region/rectangularExtent/space from Schema and LEMS definitions
#171
pgleeson
opened
3 years ago
0
feat: add documentation to populationList's text attribute
#170
sanjayankur31
closed
3 years ago
0
Document Simulation.xml
#169
cengique
closed
3 years ago
2
Improve/clarify neuron mapping that uses neurolexids etc. to map segment groups on to neuron sections
#168
sanjayankur31
opened
3 years ago
0
[Question] since `populationList` is a type of `population`, should it be included in Population in the LEMS definitions somehow?
#167
sanjayankur31
opened
3 years ago
0
Documentation update
#166
pgleeson
closed
3 years ago
0
Feat/remove acrosssegorseggroup
#165
sanjayankur31
closed
3 years ago
7
`fraction along` is not included in `nml` XML files if default value of 1.0 is used
#164
sanjayankur31
closed
3 years ago
0
Check that everything in the schema that extends standalone extends baseStandard in the XML LEMS definitions
#163
sanjayankur31
opened
3 years ago
0
units/dimensions of `initMembranePotential` are not validated
#162
sanjayankur31
closed
3 years ago
2
[Bug] XSD: MembraneProperties does not extend either Standalone or Base and so does not have an `id` attribute
#161
sanjayankur31
closed
2 years ago
3
feat: add an unformatted version of an example as a regression test
#160
sanjayankur31
closed
3 years ago
2
feat: add helper script to compare XSD schema and LEMS defintion files
#159
sanjayankur31
closed
3 years ago
0
feat: copy over child element documentation from schema to LEMS xml
#158
sanjayankur31
closed
3 years ago
0
Various complextypes are missing from the LEMS definitions, and so not included in the docs (IncludeType is an example)
#157
sanjayankur31
opened
3 years ago
1
More explicit helper messages regarding neurolexID for neuron export
#156
pgleeson
opened
3 years ago
1
Check if documentation can be added to Child elements in the LEMS definition files
#155
sanjayankur31
closed
3 years ago
4
Update child documentation in schema to allow better generation of libNeuroML docs
#154
sanjayankur31
closed
2 years ago
0
Add Hay 2011/Blue Brain/Allen CaDynamics [Ca2+] pool as standard, recommended concentrationModel
#153
pgleeson
opened
3 years ago
0
Shellradius equation in DecayingPoolConcentrationModel CoreType[Question]
#152
FerreroRoche
opened
3 years ago
1
[HackathonMar21] Example of model to be converted to NeuroML (Bahl et al. 2012)
#151
pgleeson
opened
3 years ago
2
Include morphology from another file
#150
pgleeson
opened
3 years ago
1
[HackathonMar21] Create a gap junction coupled network with NeuroMLlite
#149
pgleeson
opened
3 years ago
1
Ion Channel model standardization and mutation analysis
#148
VahidGh
opened
3 years ago
5
[HackathonMar21] Test and improve NestML<->NeuroML interactions
#147
pgleeson
opened
3 years ago
3
[HackathonMar21] Create a pure Python SWC -> NeuroML converter
#146
pgleeson
opened
3 years ago
0
[HackathonMar21] Test and improve Moose<->NeuroML interactions
#145
pgleeson
opened
3 years ago
0
[HackathonMar21] Test and improve Arbor<->NeuroML interactions
#144
pgleeson
opened
3 years ago
5
For NML v2.1 release
#143
pgleeson
closed
3 years ago
0
Set up new landing page for neuroml.org
#142
sanjayankur31
closed
3 years ago
1
chore: remove extra space around "_"
#141
sanjayankur31
closed
3 years ago
1
Channels.xml: fixedTimeCourse: missing/wrong reference to gateHH
#140
sanjayankur31
closed
3 years ago
1
Plan to drop Python 2 support
#139
sanjayankur31
closed
2 years ago
3
Links to bioportal references lead to "page not found"
#138
sanjayankur31
closed
3 years ago
3
Add feature issue template
#137
sanjayankur31
closed
3 years ago
1
Q10 in leak channels
#229
MRIO
opened
3 years ago
2
NeuroMLCoreDimensions.html: Conversion factors for degC and K are wrong
#136
sanjayankur31
closed
3 years ago
2
fix(generate.py): use Decimal to correctly report conversion factors
#135
sanjayankur31
closed
3 years ago
1
Fix float conversion issues when generating NeuroMLCoreDimensions.html
#134
sanjayankur31
closed
3 years ago
0
generate.py: Fix for python39 and cosmetic tweaks
#133
sanjayankur31
closed
3 years ago
2
Experimental
#132
pgleeson
closed
3 years ago
0
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