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NeuroML
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org.neuroml.export
Export from NeuroML & LEMS
http://neuroml.org
GNU Lesser General Public License v3.0
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Changes for NeuroML v2.3.1 release
#120
pgleeson
closed
3 weeks ago
0
Add location of neuron when pip installed on Binder & SED-ML update
#119
pgleeson
closed
1 month ago
0
Check if cell is CELL_2CA_POOLS_COMP_TYPE
#118
pgleeson
closed
2 months ago
0
To v1.10.1; Adds support for external morphology/biophysProps in cell element for Neuron/NetPyNE
#117
pgleeson
closed
3 months ago
0
Test on java 21
#116
pgleeson
closed
4 months ago
0
sedml fixes for biosimulations
#115
sanjayankur31
closed
4 months ago
1
[Bug] sed-ml export: `id` attribute of `report` needs cleaning
#114
sanjayankur31
closed
3 weeks ago
0
netpyne: expose cvode bits from LEMS
#112
sanjayankur31
closed
6 months ago
1
Add functionality to save file outputs of sed-ml
#111
pgleeson
closed
7 months ago
0
feat(neuron/netpyne): use `%r` instead of `%e` or `%s`
#110
sanjayankur31
opened
7 months ago
3
feat(nrnwriter): also handle ChannelDensityNonUniformNernst
#109
sanjayankur31
closed
8 months ago
0
To v1.9.1
#108
pgleeson
closed
11 months ago
0
Update to use of units in mod files
#107
pgleeson
closed
1 year ago
0
Improve error reporting when things go wrong while generating NEURON code: to enable the use to have some idea of where to look
#106
sanjayankur31
opened
1 year ago
0
feat(neuron-writer): use `Meta` to allow use of cvode
#105
sanjayankur31
closed
1 year ago
3
Feat/99 treat all normal - test on experimental
#104
pgleeson
closed
1 year ago
0
[neuron-writer] how can one set the tolerance value?
#103
sanjayankur31
opened
1 year ago
14
feat(graphviz): prevent overlapping in generated graphs
#102
sanjayankur31
closed
1 year ago
0
Feat/99 treat all normal - test in experimental branch
#101
pgleeson
closed
1 year ago
0
jsonserializer: Treat `all` as a normal subgroup, reserve and use `nrn_all` as list of all segments/sections
#100
sanjayankur31
closed
1 year ago
4
[Bug] JSONSerializer always puts all sections into an `all` NEURON section list, even if the NeuroML cell morphology has a `all` segment group that does not include all segments/segment groups in it
#99
sanjayankur31
closed
11 months ago
0
Improve path related errors to help users figure out what is wrong with their paths
#98
sanjayankur31
opened
1 year ago
2
generated `time.dat` does not seem to put each time value on new line
#97
sanjayankur31
opened
1 year ago
0
Updates for NMLv2.3
#96
pgleeson
closed
11 months ago
0
Stick to win 2019 for testing
#95
pgleeson
closed
1 year ago
0
feat: remove `getSegment` from `SpecificCapacitance` and `Resistivity`
#94
sanjayankur31
closed
1 year ago
0
Development->exp
#93
pgleeson
closed
1 year ago
1
Latest Development -> integ
#92
pgleeson
closed
1 year ago
1
Test on java 19
#91
pgleeson
closed
1 year ago
0
fix(check-PATH): split using colon, not semi-colon
#90
sanjayankur31
closed
1 year ago
0
Correcting units for Neuron saving of channel cond/current
#89
pgleeson
closed
1 year ago
0
Test sbml fix
#88
pgleeson
closed
1 year ago
0
Also check directories in `$PATH` for `NEURON_HOME`
#87
sanjayankur31
closed
1 year ago
0
fix(mac): check for `libnrnmech.dylib` on macs
#86
sanjayankur31
closed
1 year ago
2
Neuron mechanism fails with MacOS .dylib files[Bug]
#85
christian-oreilly
closed
11 months ago
4
Put back in test on sbml validity
#84
pgleeson
closed
1 year ago
0
Temp disable sbml validation
#83
pgleeson
closed
2 years ago
0
Test on windows-2019
#82
pgleeson
closed
2 years ago
0
Support for MinGW and newer versions of NEURON?
#81
clausagerskov
opened
2 years ago
1
NeuroML 2.2 release
#80
pgleeson
closed
2 years ago
0
Update ci.yml
#79
pgleeson
closed
2 years ago
0
feat(NeuronWriter): do not print env info on successful execution
#78
sanjayankur31
closed
2 years ago
0
[BUG]: `getPulseGenMethod` for Brian 2 doesn't properly account for the simulation time line
#77
jonrkarr
opened
2 years ago
0
Use LEMS model language symbol with SED-ML
#76
jonrkarr
closed
2 years ago
0
fix(NeuronWriter): also replace [ and ] in recording columns
#74
sanjayankur31
closed
2 years ago
1
NeuronWriter needs to replace tokens that are reserved in Python
#73
sanjayankur31
closed
2 years ago
2
Why do exported SED-ML files use model language urn:sedml:language:neuroml2 rather than LEMS?
#113
jonrkarr
opened
3 years ago
0
Bump jackson-databind from 2.7.4 to 2.9.10.7
#72
dependabot[bot]
closed
2 years ago
2
For NML v2.1 release
#71
pgleeson
closed
3 years ago
0
Bump jackson-databind from 2.10.3 to 2.10.5.1
#70
dependabot[bot]
closed
3 years ago
1
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