Neurobiologist / EC601-Pulmonary-Embolism

Development of a Deep Learning Model to Diagnose Pulmonary Embolism
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EC601-Pulmonary-Embolism

This repository contains our contributions to the Kaggle competition Pulmonary Embolism Detection.

Folder Contents
CNN-LSTM-Model Code and images on CNN_LSTM Model to detect PE
Model Trained model for CNN_LSTM Model
PENet Code and information on experiments with PENet [1]
Website Code for the physician interface
Documents Data Exploration, Literature Review, Sprint #1 #2 #3 #4 #5 and Poster

Development of a Deep Learning Model to Diagnose Pulmonary Embolism

A pulmonary embolism (PE) is a potentially life-threatening obstruction of the pulmonary artery. The diverse clinical presentation and symptomatology of PE can pose challenges in prompt and accurate diagnosis, and complications can rapidly escalate in severity. The goal of this project was to develop a deep learning model using the RSNA-STR Pulmonary Embolism CT (RSPECT) Dataset to enable the accurate automatic identification of PE in computed tomography pulmonary angiography (CTPA) images [2]. CTPA is currently the gold standard method of diagnosis for PE, but the size and complexity of the imaging data can lead to human error or delays in diagnosis. Advancements in the automated diagnosis of PE have the potential to expedite diagnosis, improve accuracy of PE detection, and improve patient outcomes.

Poster

Poster

References

[1] Huang, S. C., Kothari, T., Banerjee, I., Chute, C., Ball, R. L., Borus, N., ... & Dunnmon, J. (2020). PENet—a scalable deep-learning model for automated diagnosis of pulmonary embolism using volumetric CT imaging. npj Digital Medicine, 3(1), 1-9.

[2] RSNA-STR Pulmonary Embolism CT (RSPECT) Dataset, Copyright RSNA, 2020: https://www.rsna.org/education/ai-resources-and-training/ai-image-challenge/rsna-pe-detection-challenge-2020