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Nextomics / NextDenovo

Fast and accurate de novo assembler for long reads
GNU General Public License v3.0
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Publication plan #148

Closed rkajitani closed 2 years ago

rkajitani commented 2 years ago

This is not a technical issue. NextDenovo outperformed other tools for several PacBio-CLR data of ours, and I want to adopt this tool in the associated projects. Is there a preprint or document describing the algorithm of NextDenovo? Or, I'd be pleased if I could know the rough schedule for the publication. These will be helpful for me in persuading the project members. Thank you for developing the impressive tool!

Rei Kajitani

moold commented 2 years ago

Hi, first, thank you very much for your support. Unfortunately, there is no public preprint or document describing the algorithm by now. But, here are some benchmark results. Since I work in a company and have a lot of daily work, so I do not have much time to prepare the NextDenovo paper, but I am still working on it and plan to publish it in this year.

rkajitani commented 2 years ago

Thank you for the reply and the benchmark results. I am really looking forward to your paper (including preprint)!