moold
commented
1 year ago Did you run it successfully with the -a 1 parameter?
Open tingyang-commits opened 1 year ago
moold
commented
1 year ago Did you run it successfully with the -a 1 parameter?
Describe the bug NextDenovo/bin/nextgraph -a 3 -f 01.ctg_graph.input.seqs 03.ctg_graph/01.ctg_graph.input.ovls/seed_cns10.input.ovls -o seed_cns10.gfa
Error message [INFO] 2022-11-10 10:05:24 Initialize graph and reading... [INFO] 2022-11-10 10:06:50 Initial Node(s): 310430, Edge(s): 898125 [INFO] 2022-11-10 10:07:16 Depth stat, Mid: 2.000 Max: 4000.000 Repeat: 3.000 L:N:H: 0.534:0.346:0.120 [INFO] 2022-11-10 10:07:16 Outdegree stat, Mid: 1.000 Max: 2000.000 Repeat: 1.500 L:N:H: 0.889:0.111:0.001 [INFO] 2022-11-10 10:07:18 Chimeric node ratio: 0.332% (candidate: 1.033%) [INFO] 2022-11-10 10:07:24 Assembly done and outputting... [WARNING] 2022-11-10 10:07:24 Output with GFA2 format has not been fully tested. Segmentation fault Try to figure out which ovls files cause the error, i run each ovls with the command: NextDenovo/bin/nextgraph -a 3 -f 01.ctg_graph.input.seqs 03.ctg_graph/01.ctg_graph.input.ovls/seed_cns.input.ovls -o seed_cns.gfa, and foreach ovls, it could work well, but when combined all ovls files, it produced Segmentation fault