How to run nextdenovo on lsf system

Nextomics / NextDenovo

Fast and accurate de novo assembler for long reads

GNU General Public License v3.0

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How to run nextdenovo on lsf system #20

Closed zzlzef closed 4 years ago

zzlzef commented 4 years ago

job_type = lsf i don't know how to set cluster_options

moold commented 4 years ago

I do not have a LSF system, but may be you can try use bsub --help to find options about defining cpu and memory of each job. NextDenovo will replace {vf}, {cpu}, {bash} in cluster_options with specific values needed for each jobs.