I am using nextDenovo to assamble genome with ONT reads.
The long reads usually have low base quality.
And I wonder how these sequences will be handled in Nextdenove? Discard or correct?
Nextdenovo discards reads with low mapping coverage or clips regions of low mapping coverage in reads, and low-quality reads generally have lower mapping coverage.
I am using nextDenovo to assamble genome with ONT reads. The long reads usually have low base quality. And I wonder how these sequences will be handled in Nextdenove? Discard or correct?![image](https://github.com/Nextomics/NextDenovo/assets/95477328/3991614e-fe9e-4ca2-97d8-9a9e4e734764)