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Nextomics / NextDenovo

Fast and accurate de novo assembler for long reads
GNU General Public License v3.0
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task = ？ #25

Closed BoWangXJTU closed 4 years ago

BoWangXJTU commented 4 years ago

What is the relationship between 'correct' and 'assemble' ?

moold commented 4 years ago

NextDenovo use a correct-then-assemble strategy, so it will do the self-correction, firstly (corrrect step), and then assemble the corrected reads using string-graph, and output the assembled genome (assemble step). In most situations, you can set task = 'all'.

BoWangXJTU commented 4 years ago

Could I use task = 'correct' firstly, and then I use task = 'assembly'.

moold commented 4 years ago

Yes.

BoWangXJTU commented 4 years ago

Thank U!