task assemble error - Githubissues

Nextomics / NextDenovo

Fast and accurate de novo assembler for long reads

GNU General Public License v3.0

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task assemble error #27

Closed BoWangXJTU closed 4 years ago

BoWangXJTU commented 4 years ago

Hi, After correct task, I run 'assemble task', but I got this error.

Could you give me a help?

Traceback (most recent call last): File "/home/wangbo/softwares/NextDenovo/nextDenovo", line 518, in main(args) File "/home/wangbo/softwares/NextDenovo/nextDenovo", line 448, in main cns_output = get_cns_output(task.subtasks) UnboundLocalError: local variable 'task' referenced before assignment

moold commented 4 years ago

you can try to set task=all， and do not change the work directory.

BoWangXJTU commented 4 years ago

Ok, I will do it. Thank you for your reply.

BoWangXJTU commented 4 years ago

Hi, rewrite = yes or no ?

moold commented 4 years ago

rewrite = yes