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Nextomics / NextDenovo

Fast and accurate de novo assembler for long reads
GNU General Public License v3.0
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Assemble the genome with corrected fasta using NextDenovo2.1 #35

Closed jiahaow123456 closed 4 years ago

jiahaow123456 commented 4 years ago

HI, I am trying to assemble the genome with corrected fasta using NextDenovo2.1. I have set 'task = assemble', 'input_type = corrected' and 'input.fofn' containing corrected fasta files but something is wrong. The input fasta files were generated by NextDenovo1 and have been compressed and moved to another place. How could I just running the assemble step with the corrected data? Thank you!

moold commented 4 years ago

If the corrected data were generated by NextDenovo, just set task=all and rewrite=yes, and run the same main command again, please keep the primary directory structure. If the primary directory structure has been changed or the corrected data were generated by other tools, currently, NextDenovo will not work. I will fixed it in the future release.

jiahaow123456 commented 4 years ago

OK，thank you~