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Nextomics / NextDenovo

Fast and accurate de novo assembler for long reads
GNU General Public License v3.0
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Add GFA in output #40

Closed xuzhougeng closed 4 years ago

xuzhougeng commented 4 years ago

Many assembler output GFA, such as Canu, miniasm.

This file can be visualized in Bandage for check the assembly.

Could you add the this format output in future development?

moold commented 4 years ago

see nextgraph option, you will find -a option can be used to define output format.

kim-fehl commented 2 years ago

The link above doesn't work, this does: https://nextdenovo.readthedocs.io/en/latest/UTILITY.html#nextgraph