nextgraph: asg.c:1270: update_graph: Assertion `mode == 10' failed.

Nextomics / NextDenovo

Fast and accurate de novo assembler for long reads

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nextgraph: asg.c:1270: update_graph: Assertion `mode == 10' failed. #47

Closed huangyixian123 closed 4 years ago

huangyixian123 commented 4 years ago

Hi! I get the following error in "01_rundir/03.ctg_graph/01.ctg_graph.sh.work/ctg_graph00/nextDenovo.sh.e": "nextgraph: asg.c:1270: update_graph: Assertion `mode == 10' failed. 01_rundir/03.ctg_graph/01.ctg_graph.sh.work/ctg_graph01/nextDenovo.sh: line 5: 208229 Aborted (core dumped) /apps/NextDenovo/bin/nextgraph -a 0 -n 45 -f 01_rundir/03.ctg_graph/01.ctg_graph.input.seqs 01_rundir/03.ctg_graph/01.ctg_graph.input.ovls". What should I do to solve it? Thanks!

moold commented 4 years ago

Hi，could you check whether any input ovl file is empty?

huangyixian123 commented 4 years ago

There is not empty "cns.filt.dovt.ovl" in "/02.cns_align/02.cns_align.sh.work/cns_align*".

moold commented 4 years ago

Hi, maybe you can try to decompress the ovl files using bin/ovl_cvt to see which file induced this problem? and re-generate this ovl file again.