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Nextomics / NextDenovo

Fast and accurate de novo assembler for long reads
GNU General Public License v3.0
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NextDenovo on SLURM #58

Closed cbirbes closed 2 years ago

cbirbes commented 4 years ago

Hi, I tried to run NextDenovo on slurm, using the option i saw in other issues : cluster_options = -p workq --cpu-per-taks={cpu} --mem-per-taks {vf} I also tried to change to -c or -–cpus-per-task={cpu} -–mem-per-cpu={vf}. But run always fail at the same point :

drmaa.errors.InvalidAttributeValueException: code 14: Invalid native specification: -p workq -c 1 --mem 1G (Unsupported option: -c)

cpu option is always wrong whatever i try, do you have a solution for that ? (when i'm reserving ressources on this cluster i use -c X and it work perfectly)

moold commented 4 years ago

Hi, see FAQ i or here

moold commented 2 years ago

Try the latest version, which does not require drmaa.