Dear developer, I meet the following error:
2020-05-07 00:48:53,087 sort_align failed: please check the following logs:
[ERROR] 2020-05-07 00:48:53,087 01_rundir/01.raw_align/03.sort_align.sh.work/sort_align00/nextDenovo.sh.e
[ERROR] 2020-05-07 00:48:53,087 2.hagfish/01_rundir/01.raw_align/03.sort_align.sh.work/sort_align01/nextDenovo.sh.e
moold
commented
4 years ago
Dear developer, I meet the following error: 2020-05-07 00:48:53,087 sort_align failed: please check the following logs: [ERROR] 2020-05-07 00:48:53,087 01_rundir/01.raw_align/03.sort_align.sh.work/sort_align00/nextDenovo.sh.e [ERROR] 2020-05-07 00:48:53,087 2.hagfish/01_rundir/01.raw_align/03.sort_align.sh.work/sort_align01/nextDenovo.sh.e
/software/nextdenovo/NextDenovo/bin/ovl_sort -m 1g -t 20 -k 50 -i ./01_rundir/01.raw_align/.input.seed.001.idx -o input.seed.001.sorted.ovl input.fofn ovl_sort: ovl_sort.c:688: main: Assertion `opts.max_mem > 100000000' failed.
It seems I didn't call enough mem. How should I debug this error? Thanks in advance.