Open JanssenBrm opened 3 months ago
To clarify, this is about the infamous MOGPR method, which is compute intensive and can become very slow quite easily. The logging is also not optimal, and some things can only be found in yarn logs for the moment.
I think there's two possible strategies:
I got this from the jep based run:
warning in stationary: failed to import cython module: falling back to numpy
warning in coregionalize: failed to import cython module: falling back to numpy
warning in choleskies: failed to import cython module: falling back to numpy
tmp/venv/GPy/kern/src/symmetric.py:56: SyntaxWarning: "is" with a literal. Did you mean "=="?
if symmetry_type is 'odd':
tmp/venv/GPy/kern/src/symmetric.py:58: SyntaxWarning: "is" with a literal. Did you mean "=="?
elif symmetry_type is 'even':
tmp/venv/GPy/models/mrd.py:307: SyntaxWarning:"is not" with a literal. Did you mean "!="?
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/fromnumeric.py:3474: RuntimeWarning:Mean of empty slice.
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:189: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:264: RuntimeWarning:Degrees of freedom <= 0 for slice
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:222: RuntimeWarning:invalid value encountered in true_divide
/opt/venv/lib64/python3.8/site-packages/numpy/core/_methods.py:256: RuntimeWarning:invalid value encountered in true_divide
tmp/venv/GPy/kern/src/stationary.py:168: RuntimeWarning:overflow encountered in true_divide
tmp/venv/GPy/kern/src/stationary.py:484: RuntimeWarning:overflow encountered in multiply
tmp/venv/GPy/kern/src/stationary.py:484: RuntimeWarning:invalid value encountered in multiply
tmp/venv/GPy/kern/src/stationary.py:487: RuntimeWarning:overflow encountered in multiply
tmp/venv/GPy/kern/src/stationary.py:487: RuntimeWarning:invalid value encountered in multiply
I've noticed quite a big performance difference when executing UDFs using the Python and Python-Jep environments. For example:
You can test this yourself with the following script: https://github.com/Open-EO/FuseTS/blob/main/src/fusets/openeo/services/publish_mogpr.py
You just need to use uncomment the
execute_udf
function and comment out thegenerate_mogpr_udp
function. The runtime is configured in that same script: https://github.com/Open-EO/FuseTS/blob/main/src/fusets/openeo/services/publish_mogpr.py#L77Unfortunately this makes the Python-Jep runtime not useable in our case. This also means that we cannot use the
apply_metadata
fixes that were solved in https://github.com/Open-EO/openeo-geotrellis-extensions/issues/266