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Open-Systems-Pharmacology / RE-Test-Reports

Assess consistency of simple reports generated using `{ospsuite.reportingengine}` package
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Reporting Engine Test Reports

Open System Pharmacology 2024-07-05

📔 Total Reports 🕵 Total Tests 📊 Global Success Rate
15 625

Test Infrastructure

Click to expand ## R version 4.4.1 (2024-06-14 ucrt) ## Platform: x86_64-w64-mingw32/x64 ## Running under: Windows Server 2022 x64 (build 20348) ## ## Matrix products: default ## ## ## locale: ## [1] LC_COLLATE=English_United States.utf8 ## [2] LC_CTYPE=English_United States.utf8 ## [3] LC_MONETARY=English_United States.utf8 ## [4] LC_NUMERIC=C ## [5] LC_TIME=English_United States.utf8 ## ## time zone: UTC ## tzcode source: internal ## ## attached base packages: ## [1] stats graphics grDevices utils datasets methods base ## ## other attached packages: ## [1] RE-Test-Reports_0.0.0.9000 ospsuite.reportingengine_2.2.351 ## [3] tlf_1.5.168 ospsuite_12.0.1088 ## [5] rSharp_1.0.0 testthat_3.2.1.1 ## [7] dplyr_1.1.4 ## ## loaded via a namespace (and not attached): ## [1] gtable_0.3.5 xfun_0.45 ggplot2_3.5.1 ## [4] tzdb_0.4.0 vctrs_0.6.5 tools_4.4.1 ## [7] generics_0.1.3 parallel_4.4.1 tibble_3.2.1 ## [10] fansi_1.0.6 pkgconfig_2.0.3 data.table_1.15.4 ## [13] desc_1.4.3 lifecycle_1.0.4 compiler_4.4.1 ## [16] farver_2.1.2 stringr_1.5.1 brio_1.1.5 ## [19] munsell_0.5.1 htmltools_0.5.8.1 yaml_2.3.8 ## [22] pillar_1.9.0 crayon_1.5.3 tidyr_1.3.1 ## [25] commonmark_1.9.1 tidyselect_1.2.1 digest_0.6.36 ## [28] stringi_1.8.4 rematch2_2.1.2 diffobj_0.3.5 ## [31] purrr_1.0.2 labeling_0.4.3 rsvg_2.6.0 ## [34] rprojroot_2.0.4 fastmap_1.2.0 grid_4.4.1 ## [37] colorspace_2.1-0 cli_3.6.3 magrittr_2.0.3 ## [40] pkgbuild_1.4.4 utf8_1.2.4 readr_2.1.5 ## [43] withr_3.0.0 waldo_0.5.2 ospsuite.utils_1.5.33 ## [46] scales_1.3.0 bit64_4.0.5 rmarkdown_2.27 ## [49] bit_4.0.5 ggtext_0.1.2 png_0.1-8 ## [52] hms_1.1.3 evaluate_0.24.0 knitr_1.47 ## [55] viridisLite_0.4.2 markdown_1.13 rlang_1.1.4 ## [58] gridtext_0.1.5 Rcpp_1.0.12 glue_1.7.0 ## [61] xml2_1.3.6 pkgload_1.4.0 svglite_2.1.3 ## [64] vroom_1.6.5 jsonlite_1.8.8 R6_2.5.1 ## [67] systemfonts_1.1.0

Using Reports and Scripts as template

Users can find the reports and their description in the /Reports folder as well as the corresponding R code in the /R folder.

Models, Observed and Simulated Data are respectively available in the Models and Data folders.

Here is the summary of the reports, their scripts and their run time currently available in this repository:

Reference Test Report Script Run Time
Aciclovir-Mean Aciclovir-Mean report-aciclovir-mean.R 0.6 min
Aciclovir-Mean-SVG Aciclovir-Mean-SVG report-aciclovir-mean-svg.R 0.8 min
Aciclovir-Population Aciclovir-Population report-aciclovir-population.R 8 min
Raltegravir-Absorption Raltegravir-Absorption report-raltegravir-absorption.R 0.9 min
Raltegravir-Mass-Balance Raltegravir-Mass-Balance report-raltegravir-mass-balance.R 0.6 min
Test-NO7 Test-NO7 report-NO7.R 0.1 min
Test-NO8 Test-NO8 report-NO8.R 0.5 min
Test-NO9 Test-NO9 report-NO9.R 0.9 min
Test-NO10 Test-NO10 report-NO10.R 4.8 min
Test-NO11 Test-NO11 report-NO11.R 0.3 min
Test-NO12 Test-NO12 report-NO12.R 0.5 min
Qualification-CKD Qualification-CKD report-qualification-ckd.R 5.9 min
Qualification-HI Qualification-HI report-qualification-hi.R 5.9 min
Pediatric_Qualification_Package_UGT1A1_Ontogeny Pediatric_Qualification_Package_UGT1A1_Ontogeny report-qualification-ugt.R 1.5 min
Pediatric_Qualification_Package_P-gp_Ontogeny Pediatric_Qualification_Package_P-gp_Ontogeny report-qualification-pgp.R 1.2 min

Test Results

Report Test Status N Success [%] Warning [%] Failed [%]
Aciclovir-Mean Expected Files 1 0% 0%
Aciclovir-Mean Content of Report 1 0% 0%
Aciclovir-Mean Expected Plots 6 0% 0%
Aciclovir-Mean Expected Simulation Results 1 0% 0%
Aciclovir-Mean Expected PK Analysis Results 1 0% 0%
Aciclovir-Mean Expected Sensitivity Results 1 0% 0%
Aciclovir-Mean Expected Goodness of Fit 1 0% 0%
Aciclovir-Mean Expected PK Parameter Tables 1 0% 0%
Aciclovir-Mean-SVG Expected Files 1 0% 0%
Aciclovir-Mean-SVG Content of Report 1 0% 0%
Aciclovir-Mean-SVG Expected Plots 6 0% 0%
Aciclovir-Mean-SVG Expected Simulation Results 1 0% 0%
Aciclovir-Mean-SVG Expected PK Analysis Results 1 0% 0%
Aciclovir-Mean-SVG Expected Sensitivity Results 1 0% 0%
Aciclovir-Mean-SVG Expected Goodness of Fit 1 0% 0%
Aciclovir-Mean-SVG Expected PK Parameter Tables 1 0% 0%
Aciclovir-Population Expected Files 1 0% 0%
Aciclovir-Population Content of Report 1 0% 0%
Aciclovir-Population Expected Plots 24 0% 0%
Aciclovir-Population Expected Simulation Results 2 0% 0%
Aciclovir-Population Expected PK Analysis Results 2 0% 0%
Aciclovir-Population Expected Sensitivity Results 19 0% 0%
Aciclovir-Population Expected Goodness of Fit 2 0% 0%
Aciclovir-Population Expected PK Parameter Tables 8 0% 0%
Raltegravir-Absorption Expected Files 1 0% 0%
Raltegravir-Absorption Content of Report 1 0% 0%
Raltegravir-Absorption Expected Absorption Results 2 0% 0%
Raltegravir-Mass-Balance Expected Files 1 0% 0%
Raltegravir-Mass-Balance Content of Report 1 0% 0%
Raltegravir-Mass-Balance Expected Mass Balance Results 2 0% 0%
Test-NO7 Expected Files 2 50% 50%
Test-NO7 Content of Report 1 0% 0%
Test-NO7 Expected Simulation Results 1 0% 0%
Test-NO7 Expected PK Analysis Results 1 0% 0%
Test-NO7 Expected Goodness of Fit 2 0% 0%
Test-NO7 Expected PK Parameter Tables 1 0% 0%
Test-NO8 Expected Files 1 0% 0%
Test-NO8 Content of Report 1 0% 0%
Test-NO8 Expected Plots 31 0% 0%
Test-NO8 Expected Simulation Results 1 0% 0%
Test-NO8 Expected PK Analysis Results 1 0% 0%
Test-NO8 Expected Goodness of Fit 1 0% 0%
Test-NO8 Expected PK Parameter Tables 12 0% 0%
Test-NO9 Expected Files 1 0% 0%
Test-NO9 Content of Report 1 0% 0%
Test-NO9 Expected Plots 20 0% 0%
Test-NO9 Expected Simulation Results 4 0% 0%
Test-NO9 Expected PK Analysis Results 4 0% 0%
Test-NO9 Expected Goodness of Fit 4 0% 0%
Test-NO9 Expected PK Parameter Tables 6 0% 0%
Test-NO10 Expected Files 1 0% 0%
Test-NO10 Content of Report 1 0% 0%
Test-NO10 Expected Plots 368 0% 0%
Test-NO10 Expected Simulation Results 4 0% 0%
Test-NO10 Expected PK Analysis Results 4 0% 0%
Test-NO10 Expected Goodness of Fit 4 0% 0%
Test-NO10 Expected PK Parameter Tables 12 0% 0%
Test-NO11 Expected Files 1 0% 0%
Test-NO11 Content of Report 1 0% 0%
Test-NO11 Expected Plots 8 0% 0%
Test-NO11 Expected Simulation Results 1 0% 0%
Test-NO11 Expected PK Analysis Results 1 0% 0%
Test-NO11 Expected Goodness of Fit 2 0% 0%
Test-NO11 Expected PK Parameter Tables 1 0% 0%
Test-NO12 Expected Files 1 0% 0%
Test-NO12 Content of Report 1 0% 0%
Test-NO12 Expected Plots 14 0% 0%
Test-NO12 Expected Simulation Results 1 0% 0%
Test-NO12 Expected PK Analysis Results 1 0% 0%
Test-NO12 Expected Goodness of Fit 2 0% 0%
Test-NO12 Expected PK Parameter Tables 1 0% 0%
Test-NO12 Expected Mass Balance Results 1 0% 0%
Test-NO12 Expected Absorption Results 1 0% 0%
Qualification-CKD Report has run 1 0% 0%
Qualification-HI Report has run 1 0% 0%
Pediatric_Qualification_Package_UGT1A1_Ontogeny Report has run 1 0% 0%
Pediatric_Qualification_Package_P-gp_Ontogeny Report has run 1 0% 0%