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OpenGenomics
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mc3
Apache License 2.0
34
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Remove reheader optionals
#37
kamichiotti
closed
6 years ago
0
Correct reheader step inputs
#36
kamichiotti
closed
6 years ago
0
Correct input field expressions; separate markDir to two inputs
#35
kamichiotti
closed
6 years ago
0
Make BED file and UUID header info optional
#34
kamichiotti
closed
6 years ago
0
Indelocator Missing FORMAT Fields
#33
kamichiotti
closed
6 years ago
1
Missing COSMIC, CONTEXT, DBVS columns
#32
kamichiotti
opened
6 years ago
0
Debugged markfiles
#31
kamichiotti
closed
6 years ago
0
Correct sample mapping and merging
#30
kamichiotti
closed
6 years ago
0
Correct Picard submodule
#29
kamichiotti
closed
6 years ago
0
what happened to picard-tool submodule?
#28
davidroberson
closed
6 years ago
1
Add a license to this repository
#27
mr-c
closed
6 years ago
0
Correct typos
#26
kamichiotti
closed
6 years ago
0
Both 'postfilter' and 'fpfilter' done by mc3_vcf_postfilter.cwl
#25
kamichiotti
closed
6 years ago
0
Correct typos
#24
kamichiotti
closed
6 years ago
0
Correct typo
#23
kamichiotti
closed
6 years ago
0
Convert prep_ref to its own workflow
#22
kamichiotti
closed
6 years ago
0
Add Indelocator filter; break out ref_prep, consolidate rehead_vcfs
#21
kamichiotti
closed
6 years ago
0
Update dockerPull commands plus minor tweaks
#20
kamichiotti
closed
6 years ago
0
Add indelocator step to mc3_variant.cwl
#19
kamichiotti
closed
6 years ago
0
Make samtools-tool and picard-tool MC3 submodules
#18
kamichiotti
closed
6 years ago
0
Merge mc3_variant.cwl into mc3_vcf2maf_full.cwl
#17
kamichiotti
opened
6 years ago
0
Break out samtools-tool and pindel-tool as submodules
#16
kamichiotti
closed
6 years ago
0
indelocator-tool submodule
#15
kamichiotti
closed
6 years ago
1
Address MuTect requirement of uncompressed reference file
#14
kamichiotti
closed
6 years ago
1
Develop tcgavcf-tool submodule
#13
kamichiotti
closed
6 years ago
0
Write wrapper to build MC3 reference directory
#12
kamichiotti
opened
6 years ago
2
Check-in vcf2maf-tools
#11
kamichiotti
closed
6 years ago
1
Add opengenomics/tcgavcf-tool to prepare VCFs for mc3_vcf2maf_full.cwl
#10
kamichiotti
closed
6 years ago
1
gzip.cwl error for 'output_filename' key
#9
kamichiotti
closed
6 years ago
2
bgzip.cwl error writing to read-only file system
#8
kamichiotti
closed
6 years ago
1
Set dockerImageId to correct image name
#7
kamichiotti
closed
6 years ago
0
Merge pull request #1 from OpenGenomics/master
#6
kamichiotti
closed
6 years ago
0
Parameter fixes
#5
anurpa
closed
5 years ago
1
Missing reference inputs
#4
buchanae
closed
7 years ago
0
Add bai/fai secondary file constraints to varscan workflow.
#3
tetron
closed
8 years ago
0
Merging changes on WIP branch to master
#2
yifei-men
closed
9 years ago
2
vcfToArchive.py needs a slight tweak
#1
jacmarjorie
closed
6 years ago
2